SMTL ID : 2qvp.3 (2 other biounits)

CRYSTAL STRUCTURE OF A PUTATIVE METALLOPEPTIDASE (SAMA_0725) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.00 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: Q.91, L.92, D.93, G.94, E.95, L.96 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.93, A:G.94, A:E.95, A:L.96 Water bridges: A:R.99, A:R.99 SO4.2: 5 residues within 4Å: Chain A: H.75, R.118, N.125, N.127, R.128 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.125, A:N.125 Water bridges: A:R.118, A:N.127 Salt bridges: A:H.75, A:R.118, A:R.128 SO4.3: 2 residues within 4Å: Chain A: R.190, H.193 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.190, A:R.190, A:R.196 Salt bridges: A:R.190, A:H.193

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: L.92, R.99, N.264, N.268, E.273 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.99, A:R.99, A:N.264, A:N.268 Water bridges: A:N.264, A:E.273 GOL.5: 4 residues within 4Å: Chain A: R.13, P.251, L.252, D.253 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.13, A:L.252, A:D.253, A:D.253 Water bridges: A:R.13 GOL.6: 6 residues within 4Å: Chain A: F.17, L.30, I.33, E.34, L.86, S.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.30, A:E.34, A:S.90 GOL.7: 9 residues within 4Å: Chain A: F.130, F.131, I.132, E.133, F.225, D.226, S.231, F.232, R.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.132, A:E.133, A:D.226, A:S.231, A:R.235 GOL.8: 3 residues within 4Å: Chain A: S.185, Q.186, A.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.186 GOL.9: 3 residues within 4Å: Chain A: Y.202, Q.254, L.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.202, A:Q.254, A:Q.254 GOL.10: 7 residues within 4Å: Chain A: A.48, G.49, N.120, E.121, L.122, A.145, E.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.49, A:N.120, A:E.146 Water bridges: A:H.50 GOL.11: 4 residues within 4Å: Chain A: P.184, R.239, V.240, L.270 No protein-ligand interaction detected (PLIP) GOL.12: 3 residues within 4Å: Chain A: Q.20, T.22, D.23 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.20, A:T.22 Water bridges: A:Q.20, A:T.22, A:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein (YP_926603.1) from Shewanella amazonensis SB2B at 2.00 A resolution. To be published

Release Date

2007-08-28

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Uncharacterized protein

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