- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 4 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.154
NAG-NAG.9: 4 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.154
NAG-NAG.16: 4 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
1 PLIP interactions:1 interactions with chain C- Water bridges: C:N.154
NAG-NAG.23: 4 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
1 PLIP interactions:1 interactions with chain D- Water bridges: D:N.154
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 2 residues within 4Å:- Chain A: N.65, W.357
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Water bridges: B:K.383
- Hydrogen bonds: A:N.65, A:W.357
NAG.10: 2 residues within 4Å:- Chain B: N.65, W.357
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:N.65, B:W.357
- Water bridges: D:K.383
NAG.17: 2 residues within 4Å:- Chain C: N.65, W.357
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:N.65, C:W.357
- Water bridges: A:K.383
NAG.24: 2 residues within 4Å:- Chain D: N.65, W.357
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.65, D:W.357
- Water bridges: C:K.383
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.4: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, K.212, R.290, Y.324
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142
- Hydrogen bonds: A:E.38, A:D.70, A:R.71, A:E.197, A:K.212
- Water bridges: A:R.37, A:E.197, A:E.197, A:E.197, A:K.212, A:G.267
- Salt bridges: A:R.37, A:R.290
SIA.5: 8 residues within 4Å:- Chain A: S.286, S.289, S.291, N.318, T.319, D.320, W.321, K.352
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:W.321
- Hydrogen bonds: A:S.291, A:S.291, A:N.318, A:N.318, A:K.352
- Water bridges: A:I.287, A:I.287
SIA.11: 13 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, K.212, R.290, Y.324
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142
- Hydrogen bonds: B:E.38, B:D.70, B:R.71, B:E.197, B:K.212
- Water bridges: B:R.37, B:E.197, B:E.197, B:E.197, B:K.212, B:G.267
- Salt bridges: B:R.37, B:R.290
SIA.12: 8 residues within 4Å:- Chain B: S.286, S.289, S.291, N.318, T.319, D.320, W.321, K.352
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:W.321
- Hydrogen bonds: B:S.291, B:S.291, B:N.318, B:N.318, B:K.352
- Water bridges: B:I.287, B:I.287
SIA.18: 13 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, K.212, R.290, Y.324
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142
- Hydrogen bonds: C:E.38, C:D.70, C:R.71, C:E.197, C:K.212
- Water bridges: C:R.37, C:E.197, C:E.197, C:E.197, C:K.212, C:G.267
- Salt bridges: C:R.37, C:R.290
SIA.19: 8 residues within 4Å:- Chain C: S.286, S.289, S.291, N.318, T.319, D.320, W.321, K.352
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:W.321
- Hydrogen bonds: C:S.291, C:S.291, C:N.318, C:N.318, C:K.352
- Water bridges: C:I.287, C:I.287
SIA.25: 13 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, K.212, R.290, Y.324
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142
- Hydrogen bonds: D:E.38, D:D.70, D:R.71, D:E.197, D:K.212
- Water bridges: D:R.37, D:E.197, D:E.197, D:E.197, D:K.212, D:G.267
- Salt bridges: D:R.37, D:R.290
SIA.26: 8 residues within 4Å:- Chain D: S.286, S.289, S.291, N.318, T.319, D.320, W.321, K.352
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:W.321
- Hydrogen bonds: D:S.291, D:S.291, D:N.318, D:N.318, D:K.352
- Water bridges: D:I.287, D:I.287
- 8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.6: 4 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.1, H2O.4
CA.7: 3 residues within 4Å:- Ligands: CA.14, CA.21, CA.28
No protein-ligand interaction detected (PLIP)CA.13: 4 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.16, H2O.19
CA.14: 3 residues within 4Å:- Ligands: CA.7, CA.21, CA.28
No protein-ligand interaction detected (PLIP)CA.20: 4 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.31, H2O.34
CA.21: 3 residues within 4Å:- Ligands: CA.7, CA.14, CA.28
No protein-ligand interaction detected (PLIP)CA.27: 4 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.46, H2O.49
CA.28: 3 residues within 4Å:- Ligands: CA.7, CA.14, CA.21
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varghese, J.N. et al., Drug design against a shifting target: a structural basis for resistance to inhibitors in a variant of influenza virus neuraminidase. Structure (1998)
- Release Date
- 1998-11-11
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varghese, J.N. et al., Drug design against a shifting target: a structural basis for resistance to inhibitors in a variant of influenza virus neuraminidase. Structure (1998)
- Release Date
- 1998-11-11
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A