SMTL ID : 2qyk.2 (1 other biounit)

Crystal structure of PDE4A10 in complex with inhibitor NPV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NPV: 4-[8-(3-nitrophenyl)-1,7-naphthyridin-6-yl]benzoic acid(Non-covalent)

NPV.1: 10 residues within 4Å: Chain A: Y.84, M.198, N.246, I.261, F.265, M.282, S.293, Q.294, F.297 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.246, A:I.261, A:F.265, A:F.265, A:F.297 Hydrogen bonds: A:Q.294 pi-Stacking: A:F.297 pi-Cation interactions: A:H.85

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.89, H.125, D.126, D.243 Ligands: MG.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.89, A:H.125, A:D.126, A:D.243, H2O.1, H2O.1

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.126 Ligands: NPV.1, ZN.2 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.126, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structures of the four subfamilies of phosphodiesterase-4 provide insight into the selectivity of their inhibitors. Biochem.J. (2007)

Release Date

2008-04-08

Peptides

Cyclic AMP-specific phosphodiesterase HSPDE4A10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cyclic AMP-specific phosphodiesterase HSPDE4A10

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