SMTL ID : 2qyt.1

Crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.17, G.18, K.92, A.144, R.145, K.146 Ligands: SO4.4, EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.18, A:K.146, A:K.146 Water bridges: A:K.146 Salt bridges: A:K.92 SO4.2: 7 residues within 4Å: Chain A: G.15, L.16, A.44, R.45, H.48, K.146 Ligands: SO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.16, A:R.45 Salt bridges: A:H.48, A:K.146 SO4.3: 5 residues within 4Å: Chain A: E.284, T.285, G.288, R.292, Y.308 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.284, A:Y.308 Salt bridges: A:R.292 SO4.4: 10 residues within 4Å: Chain A: G.15, L.16, G.17, C.90, T.91, K.92, D.93 Ligands: SO4.1, SO4.2, EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.17, A:T.91, A:K.92, A:D.93, A:K.146 SO4.5: 3 residues within 4Å: Chain A: Y.189, N.190 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.190

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 9 residues within 4Å: Chain A: G.15, L.16, G.17, G.18, V.19, G.20, C.90 Ligands: SO4.1, SO4.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.15, A:G.17, A:G.18, A:V.19, A:G.20 Water bridges: A:A.144 EDO.7: 3 residues within 4Å: Chain A: T.83, G.108, Q.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.83, A:Q.109 EDO.8: 3 residues within 4Å: Chain A: A.296, L.297, R.298 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.298 EDO.9: 6 residues within 4Å: Chain A: Y.22, R.65, D.157, R.158, E.159, R.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.65, A:E.159, A:E.159, A:E.159, A:R.187 EDO.10: 5 residues within 4Å: Chain A: Y.189, N.190, P.191, Y.197 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83. To be Published

Release Date

2007-09-04

Peptides

2-dehydropantoate 2-reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-dehydropantoate 2-reductase