SMTL ID : 2r0n.1 (1 other biounit)

The effect of a Glu370Asp mutation in Glutaryl-CoA Dehydrogenase on Proton Transfer to the Dienolate Intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 17 residues within 4Å: Chain A: F.133, L.135, T.136, G.141, S.142, W.168, I.169, T.170, L.212, T.368, Y.369, E.370, G.371, T.372, D.374, F.390 Ligands: TGC.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.168, A:L.212, A:Y.369 Hydrogen bonds: A:F.133, A:L.135, A:T.136, A:T.136, A:S.142, A:S.142, A:T.170, A:T.170, A:E.370, A:G.371, A:T.372, A:T.372, A:F.390 Water bridges: A:S.140 pi-Stacking: A:Y.369

1 x TGC: 3-thiaglutaryl-CoA(Non-covalent)

TGC.2: 26 residues within 4Å: Chain A: R.94, S.95, S.98, V.99, L.103, F.133, L.135, G.141, S.142, P.144, T.170, L.239, G.240, F.243, L.246, N.247, R.250, P.320, Y.369, E.370, G.371, I.375, I.379, R.382, F.390 Ligands: FAD.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.144, A:F.243, A:F.243 Hydrogen bonds: A:S.142, A:N.247, A:R.250, A:E.370, A:E.370, A:G.371 Water bridges: A:R.382 Salt bridges: A:R.94, A:R.382 pi-Stacking: A:F.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, K.S. et al., The effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate. Biochemistry (2007)

Release Date

2008-04-22

Peptides

Glutaryl-CoA dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutaryl-CoA dehydrogenase

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