SMTL ID : 2r0w.1

PFA2 FAB complexed with Abeta1-8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- GLU- PHE- ARG- HIS- ASP- SER: Amyloid beta peptide fragment(Non-covalent)

ALA-GLU-PHE-ARG-HIS-ASP-SER.1: 17 residues within 4Å: Chain A: H.31, S.32, N.33, Y.37, G.96, S.97, H.98, V.99, L.101 Chain B: W.54, W.55, D.56, N.60, R.100, H.102, N.103, D.108 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:Y.37, A:L.101, A:L.101, B:W.54 Hydrogen bonds: A:S.32, A:N.33, A:S.97, A:V.99, B:H.102, B:H.102 Salt bridges: A:H.31, B:D.56, B:D.58, B:H.102 pi-Stacking: A:H.31, A:Y.37 pi-Cation interactions: B:W.54

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: F.67, D.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardberg, A.S. et al., Molecular basis for passive immunotherapy of Alzheimer's disease. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-10-16

Peptides

IgG2a Fab fragment light chain: A
IgG2a Fab fragment heavy chain, Fd portion: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IgG2a Fab fragment light chain

IgG2a Fab fragment heavy chain, Fd portion

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