SMTL ID : 2r0z.1

PFA1 FAB complexed with GripI peptide fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- LYS- PHE- ARG- HIS- ASP: GripI peptide fragment(Non-covalent)

ALA-LYS-PHE-ARG-HIS-ASP.1: 20 residues within 4Å: Chain A: V.30, H.31, S.32, N.33, Y.37, G.96, S.97, H.98, V.99, L.101 Chain B: H.52, W.54, W.55, D.56, D.58, S.60, R.100, H.102, T.103, D.108 18 PLIP interactions: 9 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:H.52, B:W.54, A:Y.37, A:L.101 Hydrogen bonds: B:D.58, B:H.102, B:D.108, A:V.30, A:H.31, A:S.32, A:N.33, A:S.97, A:V.99 Water bridges: B:W.54 Salt bridges: B:D.56, B:H.102 pi-Cation interactions: B:W.54 pi-Stacking: A:Y.37

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: L.165, S.167, S.181, S.182, T.183 Chain B: L.151, L.179, T.186, L.187, S.188 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.181, A:T.183, B:S.188, B:S.188 GOL.3: 7 residues within 4Å: Chain A: L.42, K.44, G.62, P.64, R.66, E.86, D.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.44, A:G.62, A:R.66, A:D.87, A:D.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardberg, A.S. et al., Molecular basis for passive immunotherapy of Alzheimer's disease. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-10-16

Peptides

IgG2a Fab fragment light chain: A
IgG2a Fab fragment heavy chain, Fd portion: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IgG2a Fab fragment light chain

IgG2a Fab fragment heavy chain, Fd portion

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