SMTL ID : 2r1k.1 (1 other biounit)

OpdA from Agrobacterium radiobacter with bound diethyl phosphate from crystal soaking with the compound- 1.9 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.23, H.25, K.137, D.269 Ligands: CO.2, DPF.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.23, A:H.25, A:D.269

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: K.137, H.169, H.198, R.222 Ligands: FE2.1, DPF.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.169, A:H.198

1 x DPF: DIETHYL HYDROGEN PHOSPHATE(Non-covalent)

DPF.3: 17 residues within 4Å: Chain A: H.23, H.25, G.28, I.74, W.99, K.137, H.169, H.198, R.222, Y.225, L.239, D.269, L.271, F.274 Ligands: FE2.1, CO.2, EDO.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.74, A:Y.225, A:L.239, A:L.271 Salt bridges: A:H.25, A:H.169, A:H.198, A:R.222

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: W.99, S.276, Y.277 Ligands: DPF.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, C.J. et al., In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase. J.Mol.Biol. (2008)

Release Date

2008-02-12

Peptides

Phosphotriesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphotriesterase

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