SMTL ID : 2r2i.1

Myristoylated Guanylate Cyclase Activating Protein-1 with Calcium Bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.62, N.64, D.66, Y.68, E.73 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, A:D.66, A:Y.68, A:E.73, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.98, D.100, N.102, C.104, E.109 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:D.100, A:C.104, A:E.109, H2O.3 CA.3: 5 residues within 4Å: Chain A: D.141, N.143, D.145, E.147, E.152 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:D.145, A:E.147, A:E.152, H2O.1

1 x MYR: MYRISTIC ACID(Covalent)

MYR.4: 10 residues within 4Å: Chain A: G.1, N.2, M.3, F.41, L.43, Y.74, A.77, L.78, V.81, V.177 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.41, A:L.43, A:Y.74, A:A.77, A:V.81, A:V.177 Hydrogen bonds: A:N.2, A:M.3

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 4 residues within 4Å: Chain A: C.16, V.75, L.78, S.79 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.16 BME.6: 5 residues within 4Å: Chain A: E.26, C.27, Q.31, L.32, E.36 No protein-ligand interaction detected (PLIP) BME.7: 4 residues within 4Å: Chain A: G.103, C.104, E.147, S.149 No protein-ligand interaction detected (PLIP) BME.8: 6 residues within 4Å: Chain A: C.123, M.127, F.132, M.135, V.162, I.166 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stephen, R. et al., Stabilizing function for myristoyl group revealed by the crystal structure of a neuronal calcium sensor, guanylate cyclase-activating protein 1. Structure (2007)

Release Date

2007-12-11

Peptides

Guanylyl cyclase-activating protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanylyl cyclase-activating protein 1