SMTL ID : 2r3a.1

Methyltransferase domain of human suppressor of variegation 3-9 homolog 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.223, C.288, C.290, C.295, R.296 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.223, A:C.288, A:C.290, A:C.295 ZN.2: 7 residues within 4Å: Chain A: C.81, C.83, C.86, C.91, C.119 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.81, A:C.83, A:C.86, A:C.91 ZN.3: 7 residues within 4Å: Chain A: C.81, C.91, C.92, C.119, C.123 Ligands: ZN.2, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.81, A:C.92, A:C.119, A:C.123 ZN.4: 6 residues within 4Å: Chain A: C.86, C.119, C.125, C.129 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.86, A:C.119, A:C.125, A:C.129

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.5: 17 residues within 4Å: Chain A: R.151, G.152, W.153, K.190, T.193, Y.194, H.217, F.218, V.219, N.220, H.221, Y.262, V.287, C.288, K.289, C.290, L.299 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:W.153, A:T.193, A:Y.194, A:Y.194, A:N.220, A:N.220, A:H.221, A:H.221, A:K.289 Water bridges: A:R.146, A:R.151 Salt bridges: A:K.190

1 x SER: SERINE(Non-covalent)

SER.6: 8 residues within 4Å: Chain A: T.84, D.85, C.86, C.125, G.126, D.128, C.129, P.130 6 PLIP interactions: 1 Ligand-Ligand interactions, 5 interactions with chain A Water bridges: S.6, A:D.128 Hydrogen bonds: A:T.84, A:C.86, A:G.126, A:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Structural biology of human H3K9 methyltransferases. Plos One (2010)

Release Date

2007-09-11

Peptides

Histone-lysine N-methyltransferase SUV39H2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SUV39H2