SMTL ID : 2r43.1

I50V HIV-1 protease in complex with an amino decorated pyrrolidine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.8, P.81 Chain B: F.53 Ligands: G3G.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.8, A:R.8 Water bridges: B:G.48

1 x G3G: N,N'-(3S,4S)-PYRROLIDINE-3,4-DIYLBIS(4-AMINO-N-BENZYLBENZENESULFONAMIDE)(Non-covalent)

G3G.5: 25 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, V.50, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, V.50, P.81, I.84 Ligands: GOL.2 23 PLIP interactions: 12 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:V.32, B:P.81, B:I.84, A:L.23, A:A.28, A:V.32, A:I.47, A:V.82, A:I.84 Hydrogen bonds: B:D.25, B:D.30, B:D.30, B:V.50, A:D.30, A:D.30, A:V.50 Water bridges: B:R.8, B:D.29, A:G.48 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bottcher, J. et al., Structural and Kinetic Analysis of Pyrrolidine-Based Inhibitors of the Drug-Resistant Ile84Val Mutant of HIV-1 Protease. J.Mol.Biol. (2008)

Release Date

2008-09-09

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

Related Entries With Identical Sequence