- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- monomer
- Ligands
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.6: 35 residues within 4Å:- Chain A: I.9, G.10, G.12, I.13, N.14, L.32, E.33, A.34, C.39, A.40, T.41, S.42, A.44, S.45, S.46, K.47, L.48, H.50, T.170, R.171, A.172, T.206, G.207, P.208, W.209, F.213, G.231, H.233, T.270, R.317, G.353, K.354, L.355, T.356
- Ligands: EDO.7
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:T.41, A:R.317
- Hydrogen bonds: A:G.10, A:G.11, A:G.12, A:N.14, A:N.14, A:A.34, A:T.41, A:S.42, A:S.42, A:S.46, A:L.48, A:L.48, A:A.172, A:A.172, A:L.355, A:T.356
- Water bridges: A:A.40, A:S.46, A:S.46, A:S.46, A:G.207
- pi-Cation interactions: A:K.354
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 3 residues within 4Å:- Chain A: A.34, W.209
- Ligands: FAD.6
No protein-ligand interaction detected (PLIP)EDO.8: 5 residues within 4Å:- Chain A: S.43, W.468, R.469
- Ligands: EDO.9, EDO.20
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.43, A:S.43, A:R.469
- Water bridges: A:K.472
EDO.9: 3 residues within 4Å:- Chain A: W.311, W.468
- Ligands: EDO.8
No protein-ligand interaction detected (PLIP)EDO.10: 3 residues within 4Å:- Chain A: N.294, N.297, T.298
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.294
EDO.11: 3 residues within 4Å:- Chain A: N.290, L.293, N.294
No protein-ligand interaction detected (PLIP)EDO.12: 7 residues within 4Å:- Chain A: M.262, H.416, T.471, K.472, Q.473, W.476
- Ligands: IMD.15
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.472, A:Q.473
- Water bridges: A:T.420
EDO.13: 8 residues within 4Å:- Chain A: A.40, T.41, P.279, K.280, V.282, G.315, V.316
- Ligands: EDO.20
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.280, A:K.280, A:V.316, A:V.316
EDO.14: 6 residues within 4Å:- Chain A: Q.157, V.160, D.456, H.457
- Ligands: IMD.16, IMD.18
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.456, A:H.457
- Water bridges: A:Q.157, A:R.161
EDO.17: 3 residues within 4Å:- Chain A: Y.398, R.401, R.405
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.405
EDO.19: 2 residues within 4Å:- Chain A: F.106, H.110
No protein-ligand interaction detected (PLIP)EDO.20: 8 residues within 4Å:- Chain A: C.39, A.40, S.43, A.44, Y.313, S.314
- Ligands: EDO.8, EDO.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.39
- 5 x IMD: IMIDAZOLE(Non-covalent)
IMD.15: 6 residues within 4Å:- Chain A: S.412, H.416, H.444, E.445, Q.473
- Ligands: EDO.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.473
- pi-Cation interactions: A:H.444
IMD.16: 5 residues within 4Å:- Chain A: Q.157, N.424, L.427, Y.453
- Ligands: EDO.14
No protein-ligand interaction detected (PLIP)IMD.18: 6 residues within 4Å:- Chain A: V.455, D.456, H.457, E.458, W.459
- Ligands: EDO.14
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.459
- pi-Stacking: A:W.459
IMD.21: 3 residues within 4Å:- Chain A: P.237, F.265, V.310
No protein-ligand interaction detected (PLIP)IMD.22: 5 residues within 4Å:- Chain A: P.208, W.209, L.228, G.277, P.279
No protein-ligand interaction detected (PLIP)- 1 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)
- 1 x BCN: BICINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yeh, J.I. et al., Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-06-03
- Peptides
- Aerobic glycerol-3-phosphate dehydrogenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- monomer
- Ligands
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x IMD: IMIDAZOLE(Non-covalent)
- 1 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)
- 1 x BCN: BICINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yeh, J.I. et al., Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-06-03
- Peptides
- Aerobic glycerol-3-phosphate dehydrogenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A