SMTL ID : 2r4t.1

Crystal Structure of Wild-type E.coli GS in Complex with ADP and Glucose(wtGSc)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: G.18, L.19, V.22, H.161, N.162, V.211, N.246, Q.304, E.377, P.378, C.379, G.380, L.381 Ligands: ADP.2, 250.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.161, A:N.162, A:N.246, A:R.300, A:Q.304, A:Q.304, A:E.377, A:C.379, A:G.380

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 23 residues within 4Å: Chain A: K.15, G.17, G.18, D.21, V.298, S.299, R.300, Q.304, K.305, L.327, G.328, G.354, Y.355, H.356, E.357, S.360, E.377, G.380, L.381, T.382, Y.385 Ligands: GLC.1, 250.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.15, A:G.18, A:D.21, A:Q.304, A:G.354, A:H.356, A:S.360, A:G.380, A:L.381, A:T.382 Water bridges: A:A.329, A:T.382 Salt bridges: A:R.300, A:K.305, A:K.305 pi-Stacking: A:Y.355

1 x 250: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid(Non-covalent)

250.3: 10 residues within 4Å: Chain A: T.16, G.17, G.18, L.19, Y.95, W.138, H.139, Y.165 Ligands: GLC.1, ADP.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.19, A:W.138 Water bridges: A:N.106 Salt bridges: A:E.9, A:H.139

13 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)

PE3.4: 4 residues within 4Å: Chain A: K.291, W.442, P.445, R.449 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.291 PE3.5: 5 residues within 4Å: Chain A: A.164, Q.166, Y.226, S.303, F.376 No protein-ligand interaction detected (PLIP) PE3.6: 9 residues within 4Å: Chain A: I.31, D.36, A.37, R.38, F.71, H.73, V.77, G.78 Ligands: PE3.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.38, A:G.78 PE3.7: 6 residues within 4Å: Chain A: R.38, V.57, F.71, Y.80, D.125, F.127 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.127 Hydrogen bonds: A:R.38, A:R.38 PE3.8: 2 residues within 4Å: Chain A: R.470, Y.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.470 Water bridges: A:E.471 PE3.9: 3 residues within 4Å: Chain A: T.104 Ligands: PE3.10, PE3.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.104 PE3.10: 4 residues within 4Å: Chain A: R.90, T.104, D.105 Ligands: PE3.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.104 PE3.11: 4 residues within 4Å: Chain A: L.108, H.173, D.176 Ligands: PE3.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.108 PE3.12: 1 residues within 4Å: Chain A: D.268 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.268, A:D.268 PE3.13: 3 residues within 4Å: Chain A: P.85, H.86, D.89 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.86 PE3.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PE3.15: 5 residues within 4Å: Chain A: I.31, G.34, D.36 Ligands: PE3.6, PE3.16 No protein-ligand interaction detected (PLIP) PE3.16: 3 residues within 4Å: Chain A: A.32, G.34 Ligands: PE3.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, F. et al., The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase. J.Biol.Chem. (2009)

Release Date

2008-09-09

Peptides

Glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycogen synthase

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