SMTL ID : 2r52.1

Crystal structure analysis of Bone Morphogenetic Protein-6 (BMP-6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

10 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 5 residues within 4Å: Chain A: K.130, K.131, Y.132, R.133 Chain B: N.87 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.87, A:R.133, A:R.133, A:R.133 Hydrophobic interactions: A:Y.132 IPA.2: 3 residues within 4Å: Chain A: N.114, A.115, K.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.131 IPA.3: 3 residues within 4Å: Chain A: R.43, H.45, E.46 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.45 Hydrogen bonds: A:R.43, A:E.46 IPA.4: 4 residues within 4Å: Chain A: A.62, P.63, S.117, L.119 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.62, A:L.119 IPA.5: 3 residues within 4Å: Chain A: N.87, I.90 Chain B: Y.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.87 IPA.6: 4 residues within 4Å: Chain A: W.56, Y.132 Chain B: N.87, I.90 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.56, B:I.90 IPA.7: 2 residues within 4Å: Chain B: N.80, H.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.82 IPA.8: 1 residues within 4Å: Chain B: K.64 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.64 IPA.9: 1 residues within 4Å: Chain B: S.117 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.117 IPA.10: 3 residues within 4Å: Chain B: N.114, A.115, K.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.115, B:K.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saremba, S. et al., Type I receptor binding of bone morphogenetic protein 6 is dependent on N-glycosylation of the ligand. Febs J. (2007)

Release Date

2008-01-15

Peptides

Bone morphogenetic protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bone morphogenetic protein 6