SMTL ID : 2r5w.1

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: G.239, G.240, E.255, E.259, D.313 Ligands: MG.3, CL.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.239, A:E.259, A:D.313, H2O.216, H2O.217 MG.2: 3 residues within 4Å: Chain A: E.255 Ligands: MG.3, CL.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.255, H2O.213, H2O.214, H2O.215, H2O.245 MG.3: 8 residues within 4Å: Chain A: G.239, E.255, E.258, E.259, D.313 Ligands: MG.1, MG.2, CL.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.255, A:E.259, A:D.313, H2O.212 MG.6: 7 residues within 4Å: Chain B: G.239, G.240, E.255, E.259, D.313 Ligands: MG.8, CL.9 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.239, B:E.259, B:D.313, H2O.5, H2O.76 MG.7: 4 residues within 4Å: Chain B: R.254, E.255 Ligands: MG.8, CL.9 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.255, H2O.1, H2O.2, H2O.3, H2O.6 MG.8: 7 residues within 4Å: Chain B: G.239, E.255, E.259, D.313 Ligands: MG.6, MG.7, CL.9 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.255, B:E.259, B:D.313, H2O.6, H2O.37

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: G.240, E.255, D.313 Ligands: MG.1, MG.2, MG.3 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: I.50, K.51, T.144, R.147, Q.148 Ligand excluded by PLIP CL.9: 7 residues within 4Å: Chain B: G.240, E.255, E.259, D.313 Ligands: MG.6, MG.7, MG.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, N. et al., Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism. Structure (2008)

Release Date

2008-03-04

Peptides

Nicotinamide-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Nicotinamide-nucleotide adenylyltransferase

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