SMTL ID : 2r6a.1

Crystal Form BH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-6-3-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.211, P.212, S.213, V.214, G.215, K.216, T.217 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.213, A:V.214, A:G.215, A:K.216, A:T.217, A:T.217 Water bridges: A:A.218 Salt bridges: A:K.216 SO4.2: 3 residues within 4Å: Chain A: R.45, A.46, A.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.45, A:A.46, A:A.47 SO4.3: 6 residues within 4Å: Chain B: R.211, S.213, G.215, K.216, T.217 Chain G: R.370 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.213, B:V.214, B:K.216, B:T.217, B:T.217 Water bridges: B:G.215 Salt bridges: B:K.216 SO4.4: 4 residues within 4Å: Chain B: R.45, A.46, A.47, E.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.46, B:A.47 SO4.5: 7 residues within 4Å: Chain D: R.211, P.212, S.213, V.214, G.215, K.216, T.217 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.213, D:V.214, D:G.215, D:K.216, D:T.217, D:T.217 Water bridges: D:A.218 Salt bridges: D:K.216 SO4.6: 3 residues within 4Å: Chain D: R.45, A.46, A.47 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.45, D:A.46, D:A.47 SO4.7: 6 residues within 4Å: Chain A: R.370 Chain E: R.211, S.213, G.215, K.216, T.217 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:S.213, E:V.214, E:K.216, E:T.217, E:T.217 Water bridges: E:G.215 Salt bridges: E:K.216 SO4.8: 4 residues within 4Å: Chain E: R.45, A.46, A.47, E.82 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:A.46, E:A.47 SO4.9: 7 residues within 4Å: Chain G: R.211, P.212, S.213, V.214, G.215, K.216, T.217 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:S.213, G:V.214, G:G.215, G:K.216, G:T.217, G:T.217 Water bridges: G:A.218 Salt bridges: G:K.216 SO4.10: 3 residues within 4Å: Chain G: R.45, A.46, A.47 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:R.45, G:A.46, G:A.47 SO4.11: 6 residues within 4Å: Chain D: R.370 Chain H: R.211, S.213, G.215, K.216, T.217 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:S.213, H:V.214, H:K.216, H:T.217, H:T.217 Water bridges: H:G.215 Salt bridges: H:K.216 SO4.12: 4 residues within 4Å: Chain H: R.45, A.46, A.47, E.82 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:A.46, H:A.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, S. et al., Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase. Science (2007)

Release Date

2007-11-06

Peptides

Replicative helicase: ABDEGH
DnaG Primase, Helicase Binding Domain: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

G
A

H
B

C
C

F
C

I
C

Replicative helicase

DnaG Primase, Helicase Binding Domain

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