SMTL ID : 2r6o.1

Crystal structure of putative diguanylate cyclase/phosphodiesterase from Thiobacillus denitrificans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.59, N.120, E.152, D.182 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.59, A:E.152, A:D.182, H2O.1, H2O.1 MG.5: 4 residues within 4Å: Chain B: E.59, N.120, E.152, D.182 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.59, B:E.152, B:D.182, H2O.8, H2O.8 MG.6: 2 residues within 4Å: Chain B: D.183, D.205 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.183, B:D.205, H2O.9, H2O.11, H2O.12, H2O.15

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: L.61, V.62, N.120 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: M.73, P.74, S.75 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.145 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tchigvintsev, A. et al., Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J.Mol.Biol. (2010)

Release Date

2007-09-18

Peptides

Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)

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