SMTL ID : 2r7e.1

Crystal Structure Analysis of Coagulation Factor VIII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 3 residues within 4Å: Chain A: V.239, N.240, H.318 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 1 residues within 4Å: Chain B: N.248 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN-MAN-MAN.3: 7 residues within 4Å: Chain B: V.309, D.375, Q.376, N.457, N.556, N.579, P.580 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.376, B:N.457

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: A.113, D.117, K.124, D.127 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:A.113, A:D.127 CA.5: 7 residues within 4Å: Chain A: S.536, F.537, N.539, M.540, E.541, R.542, D.543 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.536, A:S.536 CA.6: 5 residues within 4Å: Chain A: K.108, A.109, S.110, D.126, D.127 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.127

2 x CU: COPPER (II) ION(Non-covalent)

CU.7: 5 residues within 4Å: Chain A: H.268, S.269, C.311, I.313, H.316 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.268, A:H.268, A:C.311, A:H.316 CU.8: 4 residues within 4Å: Chain B: H.392, C.438, I.440, H.443 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.392, B:C.438, B:H.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, B.W. et al., The tertiary structure and domain organization of coagulation factor VIII. Blood (2008)

Release Date

2008-04-15

Peptides

Coagulation factor VIII: A
Coagulation factor VIII: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VIII

Coagulation factor VIII