- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 5 residues within 4Å:- Chain A: H.27, R.314, D.316, G.317
- Ligands: AMZ.5
Ligand excluded by PLIPCL.3: 7 residues within 4Å:- Chain A: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIPCL.7: 5 residues within 4Å:- Chain B: H.27, R.314, D.316, G.317
- Ligands: AMZ.10
Ligand excluded by PLIPCL.8: 7 residues within 4Å:- Chain B: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain C: H.27, R.314, D.316, G.317
- Ligands: AMZ.15
Ligand excluded by PLIPCL.13: 7 residues within 4Å:- Chain C: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIPCL.17: 5 residues within 4Å:- Chain D: H.27, R.314, D.316, G.317
- Ligands: AMZ.20
Ligand excluded by PLIPCL.18: 7 residues within 4Å:- Chain D: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain E: H.27, R.314, D.316, G.317
- Ligands: AMZ.25
Ligand excluded by PLIPCL.23: 7 residues within 4Å:- Chain E: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain F: H.27, R.314, D.316, G.317
- Ligands: AMZ.30
Ligand excluded by PLIPCL.28: 7 residues within 4Å:- Chain F: H.210, F.294, C.295, V.315, D.316, T.319, M.339
Ligand excluded by PLIP- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.4: 18 residues within 4Å:- Chain A: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Chain B: R.238
- Ligands: AMZ.5
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.156, A:Y.166, A:E.199, A:V.202, A:Q.297, B:R.238
- Water bridges: A:R.228, A:R.228, A:I.255, A:I.255, A:I.255, A:E.310, A:E.310
- Salt bridges: A:K.156, A:R.228
ATP.9: 18 residues within 4Å:- Chain B: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Chain C: R.238
- Ligands: AMZ.10
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:K.156, B:Y.166, B:E.199, B:V.202, B:Q.297, C:R.238
- Water bridges: B:R.228, B:R.228, B:I.255, B:I.255, B:I.255, B:E.310, B:E.310
- Salt bridges: B:K.156, B:R.228
ATP.14: 18 residues within 4Å:- Chain A: R.238
- Chain C: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Ligands: AMZ.15
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:K.156, C:Y.166, C:E.199, C:V.202, C:Q.297, A:R.238
- Water bridges: C:R.228, C:R.228, C:I.255, C:I.255, C:I.255, C:E.310, C:E.310
- Salt bridges: C:K.156, C:R.228
ATP.19: 18 residues within 4Å:- Chain D: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Chain E: R.238
- Ligands: AMZ.20
15 PLIP interactions:14 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:K.156, D:E.199, D:E.199, D:V.202, D:Q.297, E:R.238
- Water bridges: D:K.156, D:R.228, D:R.228, D:I.255, D:I.255, D:I.255, D:E.310
- Salt bridges: D:K.156, D:R.228
ATP.24: 18 residues within 4Å:- Chain E: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Chain F: R.238
- Ligands: AMZ.25
15 PLIP interactions:14 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:K.156, E:E.199, E:E.199, E:V.202, E:Q.297, F:R.238
- Water bridges: E:K.156, E:R.228, E:R.228, E:I.255, E:I.255, E:I.255, E:E.310
- Salt bridges: E:K.156, E:R.228
ATP.29: 18 residues within 4Å:- Chain D: R.238
- Chain F: P.140, I.154, K.156, Y.166, E.199, E.200, Y.201, V.202, R.228, E.230, Y.253, I.255, Q.297, L.299, F.309, E.310
- Ligands: AMZ.30
15 PLIP interactions:14 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:K.156, F:E.199, F:E.199, F:V.202, F:Q.297, D:R.238
- Water bridges: F:K.156, F:R.228, F:R.228, F:I.255, F:I.255, F:I.255, F:E.310
- Salt bridges: F:K.156, F:R.228
- 6 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
AMZ.5: 11 residues within 4Å:- Chain A: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Chain C: R.264, S.266
- Ligands: CL.2, ATP.4
14 PLIP interactions:7 interactions with chain A, 7 interactions with chain C- Hydrogen bonds: A:S.26, A:N.258, A:N.258, C:S.266
- Water bridges: A:S.94, A:R.314, A:N.320, A:N.320, C:R.264, C:R.264, C:R.264, C:E.265, C:S.266
- Salt bridges: C:R.264
AMZ.10: 11 residues within 4Å:- Chain A: R.264, S.266
- Chain B: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Ligands: CL.7, ATP.9
14 PLIP interactions:7 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:S.266, B:S.26, B:N.258, B:N.258
- Water bridges: A:R.264, A:R.264, A:R.264, A:E.265, A:S.266, B:S.94, B:R.314, B:N.320, B:N.320
- Salt bridges: A:R.264
AMZ.15: 11 residues within 4Å:- Chain B: R.264, S.266
- Chain C: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Ligands: CL.12, ATP.14
14 PLIP interactions:7 interactions with chain C, 7 interactions with chain B- Hydrogen bonds: C:S.26, C:N.258, C:N.258, B:S.266
- Water bridges: C:S.94, C:R.314, C:N.320, C:N.320, B:R.264, B:R.264, B:R.264, B:E.265, B:S.266
- Salt bridges: B:R.264
AMZ.20: 11 residues within 4Å:- Chain D: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Chain F: R.264, S.266
- Ligands: CL.17, ATP.19
13 PLIP interactions:7 interactions with chain F, 6 interactions with chain D- Hydrogen bonds: F:S.266, D:S.26, D:N.258, D:N.258
- Water bridges: F:R.264, F:R.264, F:R.264, F:E.265, F:S.266, D:S.94, D:R.314, D:N.320
- Salt bridges: F:R.264
AMZ.25: 11 residues within 4Å:- Chain D: R.264, S.266
- Chain E: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Ligands: CL.22, ATP.24
13 PLIP interactions:6 interactions with chain E, 7 interactions with chain D- Hydrogen bonds: E:S.26, E:N.258, E:N.258, D:S.266
- Water bridges: E:S.94, E:R.314, E:N.320, D:R.264, D:R.264, D:R.264, D:E.265, D:S.266
- Salt bridges: D:R.264
AMZ.30: 11 residues within 4Å:- Chain E: R.264, S.266
- Chain F: H.27, S.94, R.228, I.255, N.258, G.317, G.318
- Ligands: CL.27, ATP.29
13 PLIP interactions:6 interactions with chain F, 7 interactions with chain E- Hydrogen bonds: F:S.26, F:N.258, F:N.258, E:S.266
- Water bridges: F:S.94, F:R.314, F:N.320, E:R.264, E:R.264, E:R.264, E:E.265, E:S.266
- Salt bridges: E:R.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A