SMTL ID : 2r7p.1

Crystal Structure of H225A NSP2 and AMPPNP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-octamer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: R.210, N.298, K.301, G.302, L.303, S.304, T.305 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.210, A:N.298, A:G.302, A:L.303, A:S.304, A:S.304, A:S.304, A:T.305 PO4.3: 7 residues within 4Å: Chain B: R.210, N.298, K.301, G.302, L.303, S.304, T.305 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.210, B:N.298, B:G.302, B:L.303, B:S.304, B:S.304, B:S.304, B:T.305 PO4.5: 7 residues within 4Å: Chain C: R.210, N.298, K.301, G.302, L.303, S.304, T.305 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.210, C:N.298, C:G.302, C:L.303, C:S.304, C:S.304, C:S.304, C:T.305 PO4.7: 7 residues within 4Å: Chain D: R.210, N.298, K.301, G.302, L.303, S.304, T.305 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.210, D:N.298, D:G.302, D:L.303, D:S.304, D:S.304, D:S.304, D:T.305 PO4.9: 7 residues within 4Å: Chain E: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:R.210, E:N.298, E:G.302, E:L.303, E:S.304, E:S.304, E:S.304, E:T.305, E:T.305 PO4.11: 7 residues within 4Å: Chain F: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:R.210, F:N.298, F:G.302, F:L.303, F:S.304, F:S.304, F:S.304, F:T.305, F:T.305 PO4.13: 7 residues within 4Å: Chain G: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:R.210, G:N.298, G:G.302, G:L.303, G:S.304, G:S.304, G:S.304, G:T.305, G:T.305 PO4.15: 7 residues within 4Å: Chain H: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:R.210, H:N.298, H:G.302, H:L.303, H:S.304, H:S.304, H:S.304, H:T.305, H:T.305

8 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 9 residues within 4Å: Chain A: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.107, A:S.107, A:R.109, A:R.109, A:E.147, A:E.153, A:H.221, A:K.223, A:R.227, A:R.227 Water bridges: A:E.153, A:T.220, A:K.223, A:K.223 Salt bridges: A:H.221, A:R.227 ANP.4: 9 residues within 4Å: Chain B: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.107, B:S.107, B:R.109, B:R.109, B:E.147, B:E.153, B:H.221, B:K.223, B:R.227, B:R.227 Water bridges: B:E.153, B:T.220, B:K.223, B:K.223 Salt bridges: B:H.221, B:R.227 ANP.6: 9 residues within 4Å: Chain C: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:S.107, C:S.107, C:R.109, C:R.109, C:E.147, C:E.153, C:H.221, C:K.223, C:R.227, C:R.227 Water bridges: C:E.153, C:T.220, C:K.223, C:K.223 Salt bridges: C:H.221, C:R.227 ANP.8: 9 residues within 4Å: Chain D: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.107, D:S.107, D:R.109, D:R.109, D:E.147, D:E.153, D:H.221, D:K.223, D:R.227, D:R.227 Water bridges: D:E.153, D:T.220, D:K.223, D:K.223 Salt bridges: D:H.221, D:R.227 ANP.10: 9 residues within 4Å: Chain E: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:S.107, E:S.107, E:R.109, E:R.109, E:E.147, E:E.147, E:H.221, E:K.223, E:R.227, E:R.227 Water bridges: E:E.153, E:G.222, E:K.223, E:K.223 Salt bridges: E:H.221, E:R.227 ANP.12: 9 residues within 4Å: Chain F: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:S.107, F:S.107, F:R.109, F:R.109, F:E.147, F:E.147, F:H.221, F:K.223, F:R.227, F:R.227 Water bridges: F:E.153, F:G.222, F:K.223, F:K.223 Salt bridges: F:H.221, F:R.227 ANP.14: 9 residues within 4Å: Chain G: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain G Hydrogen bonds: G:S.107, G:S.107, G:R.109, G:R.109, G:E.147, G:E.147, G:H.221, G:K.223, G:R.227, G:R.227 Water bridges: G:E.153, G:G.222, G:K.223, G:K.223 Salt bridges: G:H.221, G:R.227 ANP.16: 9 residues within 4Å: Chain H: S.107, R.109, E.147, E.153, K.188, H.221, K.223, R.227, R.240 16 PLIP interactions: 16 interactions with chain H Hydrogen bonds: H:S.107, H:S.107, H:R.109, H:R.109, H:E.147, H:E.147, H:H.221, H:K.223, H:R.227, H:R.227 Water bridges: H:E.153, H:G.222, H:K.223, H:K.223 Salt bridges: H:H.221, H:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity. J.Virol. (2007)

Release Date

2007-10-23

Peptides

Non-structural RNA-binding protein 35: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Non-structural RNA-binding protein 35

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