SMTL ID : 2r82.1

Pyruvate phosphate dikinase (PPDK) triple mutant R219E/E271R/S262D adapts a second conformational state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.617, N.768, D.769 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.768 Salt bridges: A:R.617 SO4.2: 6 residues within 4Å: Chain A: R.461, N.539, E.833, C.854, S.855, R.858 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.539, A:S.855, A:R.858 Salt bridges: A:R.461 SO4.3: 3 residues within 4Å: Chain B: R.617, N.768, D.769 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.768 Salt bridges: B:R.617 SO4.4: 6 residues within 4Å: Chain B: R.461, N.539, E.833, C.854, S.855, R.858 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.539, B:S.855, B:R.858 Salt bridges: B:R.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, K. et al., Swiveling domain mechanism in pyruvate phosphate dikinase. Biochemistry (2007)

Release Date

2008-01-01

Peptides

Pyruvate, phosphate dikinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pyruvate, phosphate dikinase