SMTL ID : 2r8r.1 (1 other biounit)

Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: A.14, P.15, G.16, V.17, G.18, K.19, T.20 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.14, A:G.16, A:V.17, A:G.18, A:K.19, A:T.20 Water bridges: A:T.20, A:T.20, A:Y.21, A:N.125 Salt bridges: A:K.19 SO4.2: 2 residues within 4Å: Chain A: R.47, K.177 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.47, A:R.47, A:R.172, A:R.172 Salt bridges: A:R.47, A:K.177 SO4.3: 4 residues within 4Å: Chain A: G.141, V.142, Q.143, R.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.143 Salt bridges: A:R.145

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: A.39, G.40, V.41, V.42, L.54, Q.59, Q.60, P.61, L.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.42, A:Q.60, A:L.62

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: R.4, G.5, R.6, F.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.5 Water bridges: A:R.4, A:R.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000. To be Published

Release Date

2007-09-25

Peptides

Sensor protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sensor protein

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