- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(4-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: R.41, Q.42
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.42, A:Q.42
- Salt bridges: A:R.41
SO4.4: 5 residues within 4Å:- Chain A: Y.115, E.119, H.124, R.125, D.126
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.125, A:D.126
- Salt bridges: A:H.124, A:R.125
SO4.5: 5 residues within 4Å:- Chain A: T.204, Q.205, H.208, N.215, N.216
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.205, A:N.216
- Salt bridges: A:H.208
SO4.13: 9 residues within 4Å:- Chain B: D.23, V.24, R.25, D.26, D.27, Q.36, W.38, K.41, N.47
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.26, B:D.27, B:Q.36
- Salt bridges: B:K.41
SO4.18: 2 residues within 4Å:- Chain C: R.41, Q.42
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.42, C:Q.42
- Salt bridges: C:R.41
SO4.19: 5 residues within 4Å:- Chain C: Y.115, E.119, H.124, R.125, D.126
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Y.115, C:E.119, C:R.125, C:D.126
- Salt bridges: C:H.124, C:R.125
SO4.20: 5 residues within 4Å:- Chain C: T.204, Q.205, H.208, N.215, N.216
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.205, C:N.216
- Salt bridges: C:H.208
SO4.28: 9 residues within 4Å:- Chain D: D.23, V.24, R.25, D.26, D.27, Q.36, W.38, K.41, N.47
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.26, D:D.27, D:Q.36
- Salt bridges: D:K.41
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: R.25, N.170, W.174
- Chain B: N.221, E.222, G.223, M.258
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:W.174, B:E.222
GOL.7: 6 residues within 4Å:- Chain A: P.171, W.174, R.175, Q.178
- Chain B: Y.146, D.150
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:D.150, A:P.171, A:R.175
GOL.14: 6 residues within 4Å:- Chain A: R.234
- Chain B: N.96, W.217, V.218, F.219
- Ligands: GOL.15
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.96, B:F.219, B:F.219
GOL.15: 9 residues within 4Å:- Chain A: R.234, D.235
- Chain B: L.133, R.141, L.176, Y.177, G.178
- Ligands: SGI.9, GOL.14
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.234, B:Y.177
GOL.21: 7 residues within 4Å:- Chain C: R.25, N.170, W.174
- Chain D: N.221, E.222, G.223, M.258
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:W.174, D:E.222
GOL.22: 6 residues within 4Å:- Chain C: P.171, W.174, R.175, Q.178
- Chain D: Y.146, D.150
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:P.171, C:R.175, D:D.150
GOL.29: 6 residues within 4Å:- Chain C: R.234
- Chain D: N.96, W.217, V.218, F.219
- Ligands: GOL.30
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.96, D:F.219, D:F.219
GOL.30: 9 residues within 4Å:- Chain C: R.234, D.235
- Chain D: L.133, R.141, L.176, Y.177, G.178
- Ligands: SGI.24, GOL.29
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.234, C:D.235, D:Y.177
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x SGI: 3-(4-hydroxyphenyl)propanamide(Non-covalent)
SGI.9: 11 residues within 4Å:- Chain A: V.228, T.229, R.234, D.235
- Chain B: R.141, E.142, T.143, L.176, P.261, P.263
- Ligands: GOL.15
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:R.141, B:T.143, B:P.263, A:V.228, A:V.228
- Hydrogen bonds: A:R.234
- Water bridges: A:T.229
SGI.24: 11 residues within 4Å:- Chain C: V.228, T.229, R.234, D.235
- Chain D: R.141, E.142, T.143, L.176, P.261, P.263
- Ligands: GOL.30
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:V.228, C:V.228, D:R.141, D:T.143, D:P.263
- Hydrogen bonds: C:R.234
- Water bridges: C:T.229
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, A. et al., The mistletoe lectin I--phloretamide structure reveals a new function of plant lectins. Biochem.Biophys.Res.Commun. (2007)
- Release Date
- 2007-10-30
- Peptides
- Beta-galactoside-specific lectin 1: AC
Beta-galactoside-specific lectin 1 chain B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(4-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x SGI: 3-(4-hydroxyphenyl)propanamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, A. et al., The mistletoe lectin I--phloretamide structure reveals a new function of plant lectins. Biochem.Biophys.Res.Commun. (2007)
- Release Date
- 2007-10-30
- Peptides
- Beta-galactoside-specific lectin 1: AC
Beta-galactoside-specific lectin 1 chain B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B