SMTL ID : 2rah.1

Human FDPS synthase in complex with novel inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.268, D.272 Ligands: 11P.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.268, H2O.1, H2O.1, H2O.5 MG.4: 3 residues within 4Å: Chain B: D.268, D.272 Ligands: 11P.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.268, H2O.5, H2O.5, H2O.9

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.81, K.82, R.85, Q.121, R.138 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.82, A:Q.121 Water bridges: A:Y.83, A:Y.83, A:Y.83, A:R.85, A:R.85, A:R.137 Salt bridges: A:R.85, A:R.138 SO4.5: 5 residues within 4Å: Chain B: G.81, K.82, R.85, Q.121, R.138 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.82, B:Q.121 Water bridges: B:Y.83, B:Y.83, B:Y.83, B:R.85, B:R.85, B:R.137 Salt bridges: B:R.85, B:R.138

2 x 11P: [(7R)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid)(Non-covalent)

11P.3: 13 residues within 4Å: Chain A: L.125, D.128, D.132, R.137, T.192, Q.196, K.225, T.226, Y.229, Q.265, D.268, K.282 Ligands: MG.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.125 Hydrogen bonds: A:R.137, A:R.137, A:K.225, A:K.225, A:K.225, A:Q.265, A:D.268, A:K.282 Water bridges: A:R.85, A:Q.196, A:D.268, A:D.268, A:K.291, A:K.291 11P.6: 13 residues within 4Å: Chain B: L.125, D.128, D.132, R.137, T.192, Q.196, K.225, T.226, Y.229, Q.265, D.268, K.282 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.125 Hydrogen bonds: B:R.137, B:R.137, B:K.225, B:K.225, B:K.225, B:Y.229, B:Q.265, B:D.268, B:K.282 Water bridges: B:R.85, B:Q.196, B:K.291, B:K.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evdokimov, A.G. et al., Human FDPS synthase in complex with novel inhibitor. To be Published

Release Date

2007-09-25

Peptides

Farnesyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthetase

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