SMTL ID : 2ras.1

Crystal structure of a putative tetr/acrr family transcriptional regulator (saro_0558) from novosphingobium aromaticivorans dsm at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: F.176, R.179 Chain B: S.158, Q.162 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: S.158, Q.162 Chain B: F.176, R.179 Ligand excluded by PLIP

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: L.78, K.87, E.137, E.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.78, A:K.87, A:E.141 EDO.4: 2 residues within 4Å: Chain A: H.133, E.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.133 EDO.5: 5 residues within 4Å: Chain A: R.95, Y.127, A.131, N.161, C.168 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.95, A:Y.127 Water bridges: A:R.95, A:D.132, A:N.161 EDO.6: 4 residues within 4Å: Chain A: K.184 Chain B: D.154, E.155, S.158 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.158, A:K.184 Water bridges: A:K.184 EDO.7: 4 residues within 4Å: Chain A: D.194, G.195, S.197, R.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.197 EDO.8: 3 residues within 4Å: Chain A: R.201, G.202, S.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.200 Water bridges: A:S.205 EDO.9: 5 residues within 4Å: Chain A: D.154, E.155, S.158 Chain B: R.179, K.184 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.158, B:K.184 Water bridges: B:K.184 EDO.10: 4 residues within 4Å: Chain A: L.151, E.155 Chain B: K.184, R.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.187, B:R.187 EDO.11: 5 residues within 4Å: Chain A: D.183, K.184, R.187 Chain B: L.151, E.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.187 EDO.12: 3 residues within 4Å: Chain B: G.136, E.137, V.153 No protein-ligand interaction detected (PLIP) EDO.13: 4 residues within 4Å: Chain B: F.121, E.122, R.125 Ligands: EDO.15 1 PLIP interactions: 1 interactions with chain B Water bridges: B:F.121 EDO.14: 4 residues within 4Å: Chain A: D.194 Chain B: D.194, S.197, R.201 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.194, B:S.197 EDO.15: 2 residues within 4Å: Chain B: F.121 Ligands: EDO.13 No protein-ligand interaction detected (PLIP) EDO.16: 2 residues within 4Å: Chain B: H.133, E.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.137 Water bridges: B:Y.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of predicted transcriptional regulator of TetR/AcrR family (YP_495839.1) from Novosphingobium aromaticivorans DSM 12444 at 1.80 A resolution. To be published

Release Date

2007-10-16

Peptides

Transcriptional regulator, TetR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator, TetR family