SMTL ID : 2rau.2 (1 other biounit)

Crystal structure of a putative lipase (NP_343859.1) from Sulfolobus solfataricus at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.216, P.217, I.218 Chain B: F.109 Ligands: PG4.5 No protein-ligand interaction detected (PLIP) CA.2: 3 residues within 4Å: Chain A: G.142, E.144 Ligands: EDO.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.142, A:E.144, A:E.144, H2O.4, H2O.5 CA.3: 4 residues within 4Å: Chain A: N.225, P.226, D.227, M.228 No protein-ligand interaction detected (PLIP) CA.11: 5 residues within 4Å: Chain A: F.109 Chain B: N.216, P.217, I.218 Ligands: PG4.15 No protein-ligand interaction detected (PLIP) CA.12: 3 residues within 4Å: Chain B: G.142, E.144 Ligands: EDO.14 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.142, B:E.144, B:E.144, H2O.16, H2O.18 CA.13: 4 residues within 4Å: Chain B: N.225, P.226, D.227, M.228 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: G.142, Q.143, E.144 Ligands: CA.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.143 Water bridges: A:Q.143, A:E.144 EDO.14: 4 residues within 4Å: Chain B: G.142, Q.143, E.144 Ligands: CA.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.143 Water bridges: B:Q.143, B:E.144

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 9 residues within 4Å: Chain A: R.211, N.216, I.218, W.219, P.231, F.241, S.245 Chain B: F.109 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.211 PG4.15: 9 residues within 4Å: Chain A: F.109 Chain B: R.211, N.216, I.218, W.219, P.231, F.241, S.245 Ligands: CA.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.211

2 x UNL: UNKNOWN LIGAND

UNL.6: 16 residues within 4Å: Chain A: T.59, S.61, Q.65, L.66, I.69, K.83, E.151, S.152, F.189, L.246, T.249, I.268, L.269, F.272, H.329, Y.333 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.61, A:E.151, A:S.152, A:T.249 Water bridges: A:G.58, A:G.58, A:T.59, A:T.59, A:L.66, A:K.83, A:S.84, A:R.211 UNL.16: 16 residues within 4Å: Chain B: T.59, S.61, Q.65, L.66, I.69, K.83, E.151, S.152, F.189, L.246, T.249, I.268, L.269, F.272, H.329, Y.333 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.61, B:S.152 Water bridges: B:G.58, B:G.58, B:T.59, B:T.59, B:L.66, B:K.83, B:S.84, B:R.211

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: W.60, S.152, F.189, Y.190, F.310 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.59 PEG.8: 2 residues within 4Å: Chain A: R.139, D.140 No protein-ligand interaction detected (PLIP) PEG.9: 5 residues within 4Å: Chain A: S.124, I.127, L.164, K.287, F.288 No protein-ligand interaction detected (PLIP) PEG.10: 5 residues within 4Å: Chain A: N.50, D.51, N.92, G.93, F.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.51 PEG.17: 5 residues within 4Å: Chain B: W.60, S.152, F.189, Y.190, F.310 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.59 PEG.18: 2 residues within 4Å: Chain B: R.139, D.140 No protein-ligand interaction detected (PLIP) PEG.19: 5 residues within 4Å: Chain B: S.124, I.127, L.164, K.287, F.288 No protein-ligand interaction detected (PLIP) PEG.20: 5 residues within 4Å: Chain B: N.50, D.51, N.92, G.93, F.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative lipase (NP_343859.1) from Sulfolobus solfataricus at 1.85 A resolution. To be published

Release Date

2007-10-09

Peptides

Putative esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative esterase

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