SMTL ID : 2rav.1

X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.8, A.10, D.211, D.215 Ligands: WO6.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:A.10, A:D.211, H2O.1, H2O.9

1 x WO6: trioxido(oxo)tungsten(Non-covalent)

WO6.2: 10 residues within 4Å: Chain A: D.8, I.9, A.10, T.43, G.44, R.45, W.174, K.188, N.214 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:I.9, A:A.10, A:G.44, A:R.45, A:K.188, A:N.214 Water bridges: A:T.43, A:T.43, A:R.45, A:R.45, A:W.174 Metal complexes: A:D.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Z. et al., The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-04-22

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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