SMTL ID : 2rbu.1

Cytochrome C Peroxidase in complex with cyclopentane-carboximidamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: P.42, V.43, R.46, W.49, P.143, D.144, A.145, F.156, L.169, M.170, A.172, H.173, L.175, G.176, K.177, T.178, H.179, N.182, S.183, L.230, T.232, F.260, F.264 Ligands: 273.2 29 PLIP interactions: 28 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.46, A:W.49, A:W.49, A:W.49, A:P.143, A:A.145, A:F.156, A:L.169, A:A.172, A:L.175, A:T.178, A:F.260, A:F.264 Hydrogen bonds: A:K.177, A:H.179, A:N.182, A:S.183, A:S.183 Water bridges: A:Y.34, A:R.46, A:G.82, A:H.179 Salt bridges: A:R.46, A:H.179, A:H.179 pi-Stacking: A:W.49 pi-Cation interactions: A:R.46 Metal complexes: A:H.173, H2O.9

1 x 273: cyclopentanecarboximidamide(Non-covalent)

273.2: 8 residues within 4Å: Chain A: H.173, K.177, T.178, M.228, M.229, L.230, D.233 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.173, A:T.178, A:L.230 Hydrogen bonds: A:M.228, A:D.233 Water bridges: A:M.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graves, A.P. et al., Rescoring docking hit lists for model cavity sites: predictions and experimental testing. J.Mol.Biol. (2008)

Release Date

2008-03-18

Peptides

Cytochrome C Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Cytochrome C Peroxidase

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