SMTL ID : 2rcn.2 (1 other biounit)

Crystal Structure of the Ribosomal interacting GTPase YjeQ from the Enterobacterial species Salmonella Typhimurium.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.305, C.310, H.312, C.318 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.305, A:C.310, A:H.312, A:C.318 ZN.4: 4 residues within 4Å: Chain B: C.305, C.310, H.312, C.318 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.305, B:C.310, B:H.312, B:C.318

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: H.268 Chain B: H.268 Ligands: MG.5 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.268, A:H.268, H2O.138, H2O.386 MG.5: 3 residues within 4Å: Chain A: H.268 Chain B: H.268 Ligands: MG.2 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.268, A:H.268, H2O.138, H2O.386

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 15 residues within 4Å: Chain A: N.168, K.169, D.171, L.172, S.199, S.200, H.201, S.224, G.225, V.226, G.227, K.228, S.229, S.230, R.279 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.168, A:K.169, A:K.169, A:S.200, A:H.201, A:G.225, A:V.226, A:G.227, A:K.228, A:S.229, A:S.230, A:S.230, A:R.279 Salt bridges: A:D.171, A:K.228 pi-Stacking: A:H.201, A:H.201 pi-Cation interactions: A:H.201 GDP.6: 15 residues within 4Å: Chain B: N.168, K.169, D.171, L.172, S.199, S.200, H.201, S.224, G.225, V.226, G.227, K.228, S.229, S.230, R.279 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:N.168, B:K.169, B:K.169, B:S.200, B:H.201, B:H.201, B:G.225, B:V.226, B:G.227, B:K.228, B:S.229, B:S.230, B:S.230, B:R.279 Salt bridges: B:D.171, B:K.228 pi-Stacking: B:H.201, B:H.201 pi-Cation interactions: B:H.201

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, C.E. et al., Structure of the ribosomal interacting GTPase YjeQ from the enterobacterial species Salmonella typhimurium. Acta Crystallogr.,Sect.F (2007)

Release Date

2008-01-29

Peptides

Probable GTPase engC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable GTPase engC

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