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SMTL ID : 2rcn.2
(1 other biounit)
Crystal Structure of the Ribosomal interacting GTPase YjeQ from the Enterobacterial species Salmonella Typhimurium.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.25 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
4 residues within 4Å:
Chain A:
C.305
,
C.310
,
H.312
,
C.318
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.305
,
A:C.310
,
A:H.312
,
A:C.318
ZN.4:
4 residues within 4Å:
Chain B:
C.305
,
C.310
,
H.312
,
C.318
4
PLIP interactions
:
4 interactions with chain B
Metal complexes:
B:C.305
,
B:C.310
,
B:H.312
,
B:C.318
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
3 residues within 4Å:
Chain A:
H.268
Chain B:
H.268
Ligands:
MG.5
4
PLIP interactions
:
1 interactions with chain A
,
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
A:H.268
,
B:H.268
,
H
2
O.6
,
H
2
O.15
MG.5:
3 residues within 4Å:
Chain A:
H.268
Chain B:
H.268
Ligands:
MG.2
4
PLIP interactions
:
1 interactions with chain A
,
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
A:H.268
,
B:H.268
,
H
2
O.6
,
H
2
O.15
2 x
GDP
:
GUANOSINE-5'-DIPHOSPHATE
(Non-covalent)
GDP.3:
15 residues within 4Å:
Chain A:
N.168
,
K.169
,
D.171
,
L.172
,
S.199
,
S.200
,
H.201
,
S.224
,
G.225
,
V.226
,
G.227
,
K.228
,
S.229
,
S.230
,
R.279
18
PLIP interactions
:
18 interactions with chain A
Hydrogen bonds:
A:N.168
,
A:K.169
,
A:K.169
,
A:S.200
,
A:H.201
,
A:G.225
,
A:V.226
,
A:G.227
,
A:K.228
,
A:S.229
,
A:S.230
,
A:S.230
,
A:R.279
Salt bridges:
A:D.171
,
A:K.228
pi-Stacking:
A:H.201
,
A:H.201
pi-Cation interactions:
A:H.201
GDP.6:
15 residues within 4Å:
Chain B:
N.168
,
K.169
,
D.171
,
L.172
,
S.199
,
S.200
,
H.201
,
S.224
,
G.225
,
V.226
,
G.227
,
K.228
,
S.229
,
S.230
,
R.279
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:N.168
,
B:K.169
,
B:K.169
,
B:S.200
,
B:H.201
,
B:H.201
,
B:G.225
,
B:V.226
,
B:G.227
,
B:K.228
,
B:S.229
,
B:S.230
,
B:S.230
,
B:R.279
Salt bridges:
B:D.171
,
B:K.228
pi-Stacking:
B:H.201
,
B:H.201
pi-Cation interactions:
B:H.201
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nichols, C.E. et al., Structure of the ribosomal interacting GTPase YjeQ from the enterobacterial species Salmonella typhimurium. Acta Crystallogr.,Sect.F (2007)
Release Date
2008-01-29
Peptides
Probable GTPase engC:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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