SMTL ID : 2rcy.1

Crystal structure of Plasmodium falciparum pyrroline carboxylate reductase (MAL13P1.284) with NADP bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-10-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: I.202, K.203, V.206 Chain E: K.203, V.206 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: K.203 Chain C: K.203, V.206 No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.12: 5 residues within 4Å: Chain F: I.202, K.203, V.206 Chain J: K.203, V.206 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain G: K.203 Chain H: K.203, V.206 No protein-ligand interaction detected (PLIP) MG.19: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.21: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

10 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 25 residues within 4Å: Chain A: G.11, L.12, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 Chain E: N.222, I.223, S.225 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:L.12, A:Q.14, A:G.16, A:S.40, A:K.42, A:V.66, A:G.92, E:N.222, E:S.225 Water bridges: A:G.13, A:G.13, A:N.52, A:T.116 Salt bridges: A:K.42 NAP.5: 28 residues within 4Å: Chain B: G.11, L.12, G.13, Q.14, M.15, G.16, Y.37, G.38, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116, G.167 Chain C: N.222, I.223, S.225 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:L.12, B:Q.14, B:G.16, B:S.40, B:K.42, B:N.52, B:V.66, B:G.92, C:N.222, C:S.225 Water bridges: B:G.13, B:N.52, B:T.116 Salt bridges: B:K.42 NAP.7: 23 residues within 4Å: Chain B: N.222, I.223, S.225 Chain C: G.11, G.13, Q.14, M.15, Y.37, P.39, S.40, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Q.14, C:S.40, C:V.66, C:G.92, B:N.222, B:S.225 Water bridges: C:L.12, C:G.13, C:G.16, C:N.52, C:K.67, C:T.116, B:T.230 NAP.9: 24 residues within 4Å: Chain D: G.11, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 Chain I: N.222, I.223, S.225 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:Q.14, D:S.40, D:K.42, D:V.66, D:G.92 Water bridges: D:L.12, D:L.12, D:G.16, D:G.16, D:N.52, D:T.116, D:G.167 Salt bridges: D:K.42 NAP.11: 26 residues within 4Å: Chain A: N.222, I.223, S.225, P.226 Chain E: G.11, L.12, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:L.12, E:Q.14, E:S.40, E:K.42, E:V.66, E:G.92, A:S.225 Water bridges: E:G.13, E:G.13, E:N.52, E:K.67, E:T.116, E:G.167 Salt bridges: E:K.42 NAP.13: 25 residues within 4Å: Chain F: G.11, L.12, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 Chain J: N.222, I.223, S.225 14 PLIP interactions: 12 interactions with chain F, 2 interactions with chain J Hydrogen bonds: F:L.12, F:Q.14, F:G.16, F:S.40, F:K.42, F:V.66, F:G.92, J:N.222, J:S.225 Water bridges: F:G.13, F:G.13, F:N.52, F:T.116 Salt bridges: F:K.42 NAP.16: 28 residues within 4Å: Chain G: G.11, L.12, G.13, Q.14, M.15, G.16, Y.37, G.38, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116, G.167 Chain H: N.222, I.223, S.225 14 PLIP interactions: 12 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:L.12, G:Q.14, G:G.16, G:S.40, G:K.42, G:N.52, G:V.66, G:G.92, H:N.222, H:S.225 Water bridges: G:G.13, G:N.52, G:T.116 Salt bridges: G:K.42 NAP.18: 23 residues within 4Å: Chain G: N.222, I.223, S.225 Chain H: G.11, G.13, Q.14, M.15, Y.37, P.39, S.40, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 12 PLIP interactions: 2 interactions with chain G, 10 interactions with chain H Hydrogen bonds: G:N.222, G:S.225, H:Q.14, H:S.40, H:V.66, H:G.92 Water bridges: H:L.12, H:G.13, H:G.16, H:N.52, H:K.67, H:T.116 NAP.20: 24 residues within 4Å: Chain D: N.222, I.223, S.225 Chain I: G.11, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 13 PLIP interactions: 13 interactions with chain I Hydrogen bonds: I:Q.14, I:S.40, I:K.42, I:V.66, I:G.92 Water bridges: I:L.12, I:L.12, I:G.16, I:G.16, I:N.52, I:T.116, I:G.167 Salt bridges: I:K.42 NAP.22: 26 residues within 4Å: Chain F: N.222, I.223, S.225, P.226 Chain J: G.11, L.12, G.13, Q.14, M.15, Y.37, P.39, S.40, K.42, N.52, A.65, V.66, K.67, P.68, I.70, V.74, I.90, C.91, G.92, M.113, P.114, T.116 14 PLIP interactions: 13 interactions with chain J, 1 interactions with chain F Hydrogen bonds: J:L.12, J:Q.14, J:S.40, J:K.42, J:V.66, J:G.92, F:S.225 Water bridges: J:G.13, J:G.13, J:N.52, J:K.67, J:T.116, J:G.167 Salt bridges: J:K.42

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: M.208, Q.214, L.219, N.222 Chain E: Q.14, A.18, T.116, L.119 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:Q.14, E:T.116, E:T.116, A:Q.214 Water bridges: A:Q.214 GOL.6: 7 residues within 4Å: Chain B: N.4, I.5, I.28, I.29, Y.140, D.143, I.144 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.4, B:D.143 GOL.14: 8 residues within 4Å: Chain F: M.208, Q.214, L.219, N.222 Chain J: Q.14, A.18, T.116, L.119 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain F Hydrogen bonds: J:Q.14, J:T.116, F:Q.214 Water bridges: F:Q.214 GOL.17: 7 residues within 4Å: Chain G: N.4, I.5, I.28, I.29, Y.140, D.143, I.144 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:N.4, G:N.4, G:D.143, G:D.143

Links

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Citation

Wernimont, A.K. et al., Crystal structure of Plasmodium falciparum pyrroline carboxylate reductase (MAL13P1.284) with NADP bound. To be Published

Release Date

2007-10-23

Peptides

Pyrroline carboxylate reductase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Pyrroline carboxylate reductase