SMTL ID : 2rd9.2 (2 other biounits)

Crystal structure of a putative yfit-like metal-dependent hydrolase (bh0186) from bacillus halodurans c-125 at 2.30 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.67, H.161, H.165 Ligands: IMD.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.161, A:H.165, H2O.4 NI.5: 4 residues within 4Å: Chain B: H.67, H.161, H.165 Ligands: IMD.2 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.67, B:H.161, B:H.165, H2O.4

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 6 residues within 4Å: Chain A: Y.187, L.188, I.190 Chain B: H.161, H.165 Ligands: NI.5 No protein-ligand interaction detected (PLIP) IMD.3: 8 residues within 4Å: Chain A: H.161, T.164, H.165 Chain B: Y.187, L.188, I.190, L.191 Ligands: NI.1 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: D.47, Y.62, N.105, A.106, V.107, P.108, I.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.47, A:I.109 Water bridges: A:Q.51, A:Q.51 GOL.6: 3 residues within 4Å: Chain B: M.24, N.25, R.128 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.25 GOL.7: 6 residues within 4Å: Chain B: W.59, E.63, V.66, H.67, E.70, L.101 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.63, B:E.70 Water bridges: B:W.59, B:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of YfiT-like putative metal-dependent hydrolase (NP_241052.1) from Bacillus halodurans at 2.30 A resolution. To be published

Release Date

2007-10-09

Peptides

BH0186 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

BH0186 protein

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