SMTL ID : 2rdp.1

The structure of a MarR family protein from Bacillus stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: L.35, Y.38, I.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.40 NA.6: 3 residues within 4Å: Chain B: L.35, Y.38, I.40 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.35

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: M.8, E.10, V.13 Chain B: A.122 No protein-ligand interaction detected (PLIP) PO4.3: 7 residues within 4Å: Chain A: L.27, R.30, I.34, R.117, D.120, L.121 Chain B: E.17 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.117 Water bridges: A:R.117, B:E.17 Salt bridges: A:R.117 PO4.7: 4 residues within 4Å: Chain A: A.122 Chain B: M.8, E.10, V.13 No protein-ligand interaction detected (PLIP) PO4.8: 7 residues within 4Å: Chain A: E.17 Chain B: L.27, R.30, I.34, R.117, D.120, L.121 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.117, B:D.120 Water bridges: B:R.117, B:R.117 Salt bridges: B:R.117

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 3 residues within 4Å: Chain A: R.138, C.139 Chain B: E.132 No protein-ligand interaction detected (PLIP) BME.5: 1 residues within 4Å: Chain A: C.70 No protein-ligand interaction detected (PLIP) BME.9: 3 residues within 4Å: Chain A: E.132 Chain B: R.138, C.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.132 BME.10: 1 residues within 4Å: Chain B: C.70 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a MarR family protein from Bacillus stearothermophilus. TO BE PUBLISHED

Release Date

2007-11-13

Peptides

putative transcriptional regulator MarR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

putative transcriptional regulator MarR