SMTL ID : 2rg2.1

Crystal structure of variant R18L of conjugated bile acid hydrolase from Clostridium perfringens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.262, R.266, K.271, S.272 Chain B: D.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.272, A:S.272 Water bridges: A:R.266, A:R.266 Salt bridges: A:R.262, A:R.266 SO4.9: 5 residues within 4Å: Chain A: D.242 Chain B: R.262, R.266, K.271, S.272 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.272, B:S.272 Water bridges: B:R.266, B:R.266 Salt bridges: B:R.262, B:R.266 SO4.17: 5 residues within 4Å: Chain C: R.262, R.266, K.271, S.272 Chain D: D.242 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.272, C:S.272 Water bridges: C:R.266, C:R.266 Salt bridges: C:R.262, C:R.266 SO4.25: 5 residues within 4Å: Chain C: D.242 Chain D: R.262, R.266, K.271, S.272 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.272, D:S.272 Water bridges: D:R.266, D:R.266 Salt bridges: D:R.262, D:R.266

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: A.5, G.150, S.152, N.167, N.168, I.169, G.170, R.235 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: T.315, Y.316, K.317 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: M.19, A.67, G.79, L.141 Ligands: EDO.5 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: F.25, G.57, T.58, T.65, F.66, A.67 Ligands: EDO.4 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: N.26, S.28, I.30, T.58, I.59 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain B: A.5, G.150, S.152, N.167, N.168, I.169, G.170, R.235 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain B: T.315, Y.316, K.317 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain B: M.19, A.67, G.79, L.141 Ligands: EDO.13 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain B: F.25, G.57, T.58, T.65, F.66, A.67 Ligands: EDO.12 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: N.26, S.28, I.30, T.58, I.59 Ligand excluded by PLIP EDO.18: 8 residues within 4Å: Chain C: A.5, G.150, S.152, N.167, N.168, I.169, G.170, R.235 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain C: T.315, Y.316, K.317 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain C: M.19, A.67, G.79, L.141 Ligands: EDO.21 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain C: F.25, G.57, T.58, T.65, F.66, A.67 Ligands: EDO.20 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain C: N.26, S.28, I.30, T.58, I.59 Ligand excluded by PLIP EDO.26: 8 residues within 4Å: Chain D: A.5, G.150, S.152, N.167, N.168, I.169, G.170, R.235 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain D: T.315, Y.316, K.317 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain D: M.19, A.67, G.79, L.141 Ligands: EDO.29 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain D: F.25, G.57, T.58, T.65, F.66, A.67 Ligands: EDO.28 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain D: N.26, S.28, I.30, T.58, I.59 Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 11 residues within 4Å: Chain A: C.1, N.81, P.83, N.174, P.224, R.227, M.260, D.273 Chain B: L.209, G.210, Q.211 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.81, A:R.227, A:D.273, B:L.209 Water bridges: A:D.20, B:Q.211 GOL.8: 3 residues within 4Å: Chain A: R.192, Y.193, N.194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.193, A:N.194, A:N.194, A:N.194 Water bridges: A:R.192, A:R.192 GOL.15: 11 residues within 4Å: Chain A: L.209, G.210, Q.211 Chain B: C.1, N.81, P.83, N.174, P.224, R.227, M.260, D.273 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:L.209, B:N.81, B:R.227, B:D.273 Water bridges: A:Q.211, B:D.20 GOL.16: 3 residues within 4Å: Chain B: R.192, Y.193, N.194 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.193, B:N.194, B:N.194, B:N.194 Water bridges: B:R.192, B:R.192 GOL.23: 11 residues within 4Å: Chain C: C.1, N.81, P.83, N.174, P.224, R.227, M.260, D.273 Chain D: L.209, G.210, Q.211 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:N.81, C:R.227, C:D.273, D:L.209 Water bridges: C:D.20, D:Q.211 GOL.24: 3 residues within 4Å: Chain C: R.192, Y.193, N.194 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.193, C:N.194, C:N.194, C:N.194 Water bridges: C:R.192, C:R.192 GOL.31: 11 residues within 4Å: Chain C: L.209, G.210, Q.211 Chain D: C.1, N.81, P.83, N.174, P.224, R.227, M.260, D.273 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:L.209, D:N.81, D:R.227, D:D.273 Water bridges: C:Q.211, D:D.20 GOL.32: 3 residues within 4Å: Chain D: R.192, Y.193, N.194 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Y.193, D:N.194, D:N.194, D:N.194 Water bridges: D:R.192, D:R.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rossmann, M. et al., Structural analysis of variants of conjugated bile acid hydrolase from Clostridium perfringens. To be Published

Release Date

2009-02-17

Peptides

Choloylglycine hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Choloylglycine hydrolase