SMTL ID : 2rhj.1 (1 other biounit)

Synthetic Gene Encoded Bacillus Subtilis FtsZ with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: G.52, A.53, K.54, E.74, S.75 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.52, A:A.53, A:K.54, A:E.74 Salt bridges: A:K.54 ACT.10: 5 residues within 4Å: Chain B: G.52, A.53, K.54, E.74, S.75 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.52, B:A.53, B:K.54 Salt bridges: B:K.54

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: T.35, G.60, A.61, G.62, A.63, G.97, G.98, T.99 Ligands: NA.6 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.35, A:A.61, A:A.63, A:G.98, A:T.99, A:T.99 Water bridges: A:T.35, A:T.99 SO4.3: 5 residues within 4Å: Chain A: G.10, G.11, G.12, G.94 Ligands: NA.6 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.11, A:G.12, A:G.94 Water bridges: A:G.10, A:G.94, A:G.97, A:G.97, A:G.100 SO4.4: 8 residues within 4Å: Chain A: S.142, K.145, E.307 Chain B: K.145, G.212, L.306, E.307, N.308 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.307, B:N.308, A:S.142 Salt bridges: B:K.145, A:K.145 SO4.5: 4 residues within 4Å: Chain A: A.242, A.243, Y.310 Chain B: Q.312 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.312, B:Q.312, A:A.243 Water bridges: B:R.131, A:D.245 SO4.11: 9 residues within 4Å: Chain B: T.35, G.60, A.61, G.62, A.63, G.97, G.98, T.99 Ligands: NA.15 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.61, B:A.63, B:G.98, B:T.99 Water bridges: B:T.35, B:T.35 SO4.12: 5 residues within 4Å: Chain B: G.10, G.11, G.12, G.94 Ligands: NA.15 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.11, B:G.12, B:G.94 Water bridges: B:G.10, B:G.94, B:G.97, B:G.97, B:G.100, B:T.123, B:T.123 SO4.13: 8 residues within 4Å: Chain A: K.145, G.212, L.306, E.307, N.308 Chain B: S.142, K.145, E.307 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.142, A:E.307, A:N.308 Salt bridges: B:K.145, A:K.145 SO4.14: 4 residues within 4Å: Chain A: Q.312 Chain B: A.242, A.243, Y.310 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.312, A:Q.312, B:A.243 Water bridges: A:R.131, B:D.245

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: T.99, G.100 Ligands: SO4.2, SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.11, A:T.99, A:G.100 Water bridges: A:G.94, A:G.97 NA.15: 4 residues within 4Å: Chain B: T.99, G.100 Ligands: SO4.11, SO4.12 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.11, B:T.99, B:G.100 Water bridges: B:G.94, B:G.97

6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.7: 7 residues within 4Å: Chain A: G.246, A.247, Q.248, D.277, D.279, L.306 Chain B: L.135 No protein-ligand interaction detected (PLIP) PG4.8: 6 residues within 4Å: Chain A: Q.266, A.269, D.270, A.273, M.282, F.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.270 Water bridges: A:Q.266 PG4.9: 6 residues within 4Å: Chain A: G.223, E.224, R.226, Y.263, E.264, D.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.225 PG4.16: 7 residues within 4Å: Chain A: L.135 Chain B: G.246, A.247, Q.248, D.277, D.279, L.306 No protein-ligand interaction detected (PLIP) PG4.17: 6 residues within 4Å: Chain B: Q.266, A.269, D.270, A.273, M.282, F.284 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.266 PG4.18: 6 residues within 4Å: Chain B: G.223, E.224, R.226, Y.263, E.264, D.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raymond, A. et al., Combined protein construct and synthetic gene engineering for heterologous protein expression and crystallization using Gene Composer. BMC Biotechnol. (2009)

Release Date

2008-10-21

Peptides

Cell Division Protein ftsZ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cell Division Protein ftsZ

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