SMTL ID : 2ri6.1

Crystal Structure of S112A mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.177 NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.10: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain D Water bridges: D:S.177

8 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 3 residues within 4Å: Chain A: Q.176, S.177, I.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.177 Water bridges: A:S.177 MLI.3: 8 residues within 4Å: Chain A: G.38, G.39, G.40, A.109, M.110, L.153, F.172, H.262 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.153 Hydrogen bonds: A:G.39, A:G.40, A:M.110 Salt bridges: A:H.262, A:H.262 MLI.5: 3 residues within 4Å: Chain B: Q.176, S.177, I.179 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.177 Water bridges: B:S.177 MLI.6: 8 residues within 4Å: Chain B: G.38, G.39, G.40, A.109, M.110, L.153, F.172, H.262 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.153 Hydrogen bonds: B:G.39, B:G.40, B:M.110 Salt bridges: B:H.262, B:H.262 MLI.8: 3 residues within 4Å: Chain C: Q.176, S.177, I.179 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.177 Water bridges: C:S.177 MLI.9: 8 residues within 4Å: Chain C: G.38, G.39, G.40, A.109, M.110, L.153, F.172, H.262 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.153 Hydrogen bonds: C:G.39, C:G.40, C:M.110 Salt bridges: C:H.262, C:H.262 MLI.11: 3 residues within 4Å: Chain D: Q.176, S.177, I.179 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.177 Water bridges: D:S.177 MLI.12: 8 residues within 4Å: Chain D: G.38, G.39, G.40, A.109, M.110, L.153, F.172, H.262 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.153 Hydrogen bonds: D:G.39, D:G.40, D:M.110 Salt bridges: D:H.262, D:H.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horsman, G.P. et al., The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad. J.Biol.Chem. (2007)

Release Date

2007-11-06

Peptides

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

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