SMTL ID : 2rij.1 (1 other biounit)

Crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter jejuni at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 11 residues within 4Å: Chain A: A.242, R.260, G.276 Chain B: A.242, R.260, G.276 Chain C: A.242, R.260, G.276 Ligands: CL.5, CL.9 Ligand excluded by PLIP CL.2: 7 residues within 4Å: Chain A: K.346, E.347, I.348 Chain D: K.346, E.347, I.348 Ligands: CL.14 Ligand excluded by PLIP CL.5: 11 residues within 4Å: Chain A: A.242, R.260, G.276 Chain B: A.242, R.260, G.276 Chain C: A.242, R.260, G.276 Ligands: CL.1, CL.9 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain B: K.346, E.347, I.348 Chain F: K.346, E.347, I.348 Ligands: CL.22 Ligand excluded by PLIP CL.9: 11 residues within 4Å: Chain A: A.242, R.260, G.276 Chain B: A.242, R.260, G.276 Chain C: A.242, R.260, G.276 Ligands: CL.1, CL.5 Ligand excluded by PLIP CL.10: 7 residues within 4Å: Chain C: K.346, E.347, I.348 Chain E: K.346, E.347, I.348 Ligands: CL.18 Ligand excluded by PLIP CL.13: 11 residues within 4Å: Chain D: A.242, R.260, G.276 Chain E: A.242, R.260, G.276 Chain F: A.242, R.260, G.276 Ligands: CL.17, CL.21 Ligand excluded by PLIP CL.14: 7 residues within 4Å: Chain A: K.346, E.347, I.348 Chain D: K.346, E.347, I.348 Ligands: CL.2 Ligand excluded by PLIP CL.17: 11 residues within 4Å: Chain D: A.242, R.260, G.276 Chain E: A.242, R.260, G.276 Chain F: A.242, R.260, G.276 Ligands: CL.13, CL.21 Ligand excluded by PLIP CL.18: 7 residues within 4Å: Chain C: K.346, E.347, I.348 Chain E: K.346, E.347, I.348 Ligands: CL.10 Ligand excluded by PLIP CL.21: 11 residues within 4Å: Chain D: A.242, R.260, G.276 Chain E: A.242, R.260, G.276 Chain F: A.242, R.260, G.276 Ligands: CL.13, CL.17 Ligand excluded by PLIP CL.22: 7 residues within 4Å: Chain B: K.346, E.347, I.348 Chain F: K.346, E.347, I.348 Ligands: CL.6 Ligand excluded by PLIP

6 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 6 residues within 4Å: Chain A: N.56, S.59, H.106, Q.107, N.108, I.109 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.56, A:N.56, A:S.59, A:N.108, A:N.108, A:I.109 Water bridges: A:N.56, A:F.57, A:F.57, A:Q.107, A:Q.107 Salt bridges: A:H.106 CIT.7: 6 residues within 4Å: Chain B: N.56, S.59, H.106, Q.107, N.108, I.109 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.56, B:N.56, B:S.59, B:N.108, B:N.108, B:I.109 Water bridges: B:N.56, B:F.57, B:F.57, B:Q.107, B:Q.107 Salt bridges: B:H.106 CIT.11: 6 residues within 4Å: Chain C: N.56, S.59, H.106, Q.107, N.108, I.109 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:N.56, C:N.56, C:S.59, C:N.108, C:N.108, C:I.109 Water bridges: C:N.56, C:F.57, C:F.57, C:Q.107, C:Q.107 Salt bridges: C:H.106 CIT.15: 6 residues within 4Å: Chain D: N.56, S.59, H.106, Q.107, N.108, I.109 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:N.56, D:N.56, D:S.59, D:H.106, D:N.108, D:N.108, D:I.109 Water bridges: D:N.56, D:F.57, D:F.57, D:Q.107, D:Q.107 Salt bridges: D:H.106 CIT.19: 6 residues within 4Å: Chain E: N.56, S.59, H.106, Q.107, N.108, I.109 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:N.56, E:N.56, E:S.59, E:H.106, E:N.108, E:N.108, E:I.109 Water bridges: E:N.56, E:F.57, E:F.57, E:Q.107, E:Q.107 Salt bridges: E:H.106 CIT.23: 6 residues within 4Å: Chain F: N.56, S.59, H.106, Q.107, N.108, I.109 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:N.56, F:N.56, F:S.59, F:H.106, F:N.108, F:N.108, F:I.109 Water bridges: F:N.56, F:F.57, F:F.57, F:Q.107, F:Q.107 Salt bridges: F:H.106

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: K.42, L.167, S.168, N.169, K.204 Chain C: D.216 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:K.42, A:N.169, C:D.216 Water bridges: A:L.180 GOL.8: 6 residues within 4Å: Chain A: D.216 Chain B: K.42, L.167, S.168, N.169, K.204 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.42, B:N.169, A:D.216 Water bridges: B:L.180 GOL.12: 6 residues within 4Å: Chain B: D.216 Chain C: K.42, L.167, S.168, N.169, K.204 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:D.216, C:K.42, C:N.169 Water bridges: C:L.180 GOL.16: 6 residues within 4Å: Chain D: K.42, L.167, S.168, N.169, K.204 Chain F: D.216 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:K.42, D:N.169, F:D.216 Water bridges: D:L.180 GOL.20: 6 residues within 4Å: Chain D: D.216 Chain E: K.42, L.167, S.168, N.169, K.204 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:K.42, E:N.169, D:D.216 Water bridges: E:L.180 GOL.24: 6 residues within 4Å: Chain E: D.216 Chain F: K.42, L.167, S.168, N.169, K.204 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:D.216, F:K.42, F:N.169 Water bridges: F:L.180

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NP_282733.1) from Campylobacter jejuni at 1.90 A resolution. To be published

Release Date

2007-10-23

Peptides

Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase

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