SMTL ID : 2rix.2 (1 other biounit)

B-specific-1,3-galactosyltransferase)(GTB) + UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.150, D.152 Ligands: UDP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.150, A:D.152, A:D.152 MN.4: 3 residues within 4Å: Chain B: D.150, D.152 Ligands: UDP.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.150, B:D.152, B:D.152

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 11 residues within 4Å: Chain A: F.60, A.61, I.62, K.63, Y.65, M.125, R.127, D.150, V.151, D.152 Ligands: MN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.60, A:I.62, A:I.62, A:Y.65, A:V.151, A:D.152 Water bridges: A:R.127 pi-Stacking: A:Y.65 UDP.5: 11 residues within 4Å: Chain B: F.60, A.61, I.62, K.63, Y.65, M.125, R.127, D.150, V.151, D.152 Ligands: MN.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:F.60, B:I.62, B:I.62, B:V.151, B:D.152 Water bridges: B:Y.65, B:Y.65, B:R.127 pi-Stacking: B:Y.65

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: H.172, F.175, T.184, Y.203, M.205, W.239, E.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.184, A:E.242 GOL.6: 7 residues within 4Å: Chain B: H.172, F.175, T.184, Y.203, M.205, W.239, E.242 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.184, B:T.184, B:E.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alfaro, J.A. et al., ABO(H) blood group A and B glycosyltransferases recognize substrate via specific conformational changes. J.Biol.Chem. (2008)

Release Date

2008-02-05

Peptides

Glycoprotein-fucosylgalactoside alpha-galactosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycoprotein-fucosylgalactoside alpha-galactosyltransferase

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