SMTL ID : 2rjg.2 (1 other biounit)

Crystal structure of biosynthetic alaine racemase from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: Y.275, Y.294, R.300, R.320, V.321, A.322 Chain B: Y.363 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.300 Salt bridges: A:R.300 SO4.2: 1 residues within 4Å: Chain A: R.39 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.39 SO4.3: 2 residues within 4Å: Chain A: R.182, C.188 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.182 SO4.5: 5 residues within 4Å: Chain A: Y.363 Chain B: Y.275, Y.294, R.300, A.322 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:Y.363 Hydrogen bonds: B:Y.294 Salt bridges: B:R.300 SO4.6: 1 residues within 4Å: Chain B: R.39 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.39 SO4.7: 2 residues within 4Å: Chain B: R.182, C.188 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.182

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.4: 11 residues within 4Å: Chain A: V.52, K.54, Y.58, L.98, H.179, A.213, S.214, R.229, G.231, I.232, Y.363 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.54, A:L.98 Hydrogen bonds: A:S.214, A:R.229, A:G.231, A:I.232, A:Y.363 Water bridges: A:G.215, A:Y.363 pi-Stacking: A:H.179 PLP.8: 11 residues within 4Å: Chain B: V.52, K.54, Y.58, K.142, H.179, A.213, S.214, R.229, G.231, I.232, Y.363 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.54 Hydrogen bonds: B:K.54, B:Y.58, B:Y.58, B:S.214, B:R.229, B:G.231, B:I.232 pi-Stacking: B:H.179 Water bridges: A:D.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, D. et al., Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis. Protein Sci. (2008)

Release Date

2008-07-08

Peptides

Alanine racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Alanine racemase

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