SMTL ID : 2rjq.1

Crystal structure of ADAMTS5 with inhibitor bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: R.20, L.21, G.23, Q.234, N.237, L.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.21

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.149, H.153, H.159 Ligands: BAT.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.153, A:H.159 ZN.3: 3 residues within 4Å: Chain A: H.113 Ligands: CL.4, CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.113

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: H.113 Ligands: ZN.3, CL.5, BAT.8 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: G.111, H.112, H.113, S.114 Ligands: ZN.3, CL.4 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: E.9, D.99, C.210, D.213 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.99, A:C.210, A:D.213, H2O.1 CA.7: 5 residues within 4Å: Chain A: D.108, L.109, C.115, T.117, E.137 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.108, A:L.109, A:C.115, A:T.117, A:E.137

1 x BAT: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE(Non-covalent)

BAT.8: 17 residues within 4Å: Chain A: G.111, D.116, T.117, L.118, G.119, M.120, T.146, H.149, E.150, H.153, H.159, S.179, S.180, I.181, L.182 Ligands: ZN.2, CL.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.117, A:T.146 Hydrogen bonds: A:D.116, A:D.116, A:L.118, A:G.119, A:G.119, A:S.180, A:L.182 Water bridges: A:A.121, A:A.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosyak, L. et al., Crystal structures of the two major aggrecan degrading enzymes, ADAMTS4 and ADAMTS5. Protein Sci. (2008)

Release Date

2007-12-11

Peptides

ADAMTS-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADAMTS-5