- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DHF: DIHYDROFOLIC ACID(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 30 residues within 4Å:- Chain A: K.16, G.19, A.20, Q.51, I.52, Y.53
- Chain B: K.16, K.17, S.18, G.19, A.20, Y.30, L.34, T.35, I.52, Y.53, P.54, A.56, A.57
- Chain D: G.48, S.49, V.50, Q.51
- Ligands: DHF.1, DHF.6, NAP.7, DHF.11, NAP.12, DHF.16, NAP.17
13 PLIP interactions:6 interactions with chain B, 6 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: B:A.20, A:A.20, A:Q.51, A:I.52, D:V.50
- Water bridges: B:K.16, B:S.18, B:S.18, B:T.35, A:Y.53
- Salt bridges: B:K.16, A:K.16
- Hydrophobic interactions: A:Q.51
NAP.7: 30 residues within 4Å:- Chain A: K.16, K.17, S.18, G.19, A.20, Y.30, L.34, T.35, I.52, Y.53, P.54, A.56, A.57
- Chain B: K.16, G.19, A.20, Q.51, I.52, Y.53
- Chain C: G.48, S.49, V.50, Q.51
- Ligands: DHF.1, NAP.2, DHF.6, DHF.11, NAP.12, DHF.16, NAP.17
12 PLIP interactions:5 interactions with chain B, 6 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: B:Q.51
- Hydrogen bonds: B:A.20, B:Q.51, B:I.52, A:A.20, C:V.50
- Salt bridges: B:K.16, A:K.16
- Water bridges: A:K.16, A:S.18, A:S.18, A:T.35
NAP.12: 30 residues within 4Å:- Chain B: G.48, S.49, V.50, Q.51
- Chain C: K.16, G.19, A.20, Q.51, I.52, Y.53
- Chain D: K.16, K.17, S.18, G.19, A.20, Y.30, L.34, T.35, I.52, Y.53, P.54, A.56, A.57
- Ligands: DHF.1, NAP.2, DHF.6, NAP.7, DHF.11, DHF.16, NAP.17
13 PLIP interactions:6 interactions with chain D, 6 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: D:A.20, C:A.20, C:Q.51, C:I.52, B:V.50
- Water bridges: D:K.16, D:S.18, D:S.18, D:T.35, C:Y.53
- Salt bridges: D:K.16, C:K.16
- Hydrophobic interactions: C:Q.51
NAP.17: 30 residues within 4Å:- Chain A: G.48, S.49, V.50, Q.51
- Chain C: K.16, K.17, S.18, G.19, A.20, Y.30, L.34, T.35, I.52, Y.53, P.54, A.56, A.57
- Chain D: K.16, G.19, A.20, Q.51, I.52, Y.53
- Ligands: DHF.1, NAP.2, DHF.6, NAP.7, DHF.11, NAP.12, DHF.16
12 PLIP interactions:1 interactions with chain A, 5 interactions with chain D, 6 interactions with chain C- Hydrogen bonds: A:V.50, D:A.20, D:Q.51, D:I.52, C:A.20
- Hydrophobic interactions: D:Q.51
- Salt bridges: D:K.16, C:K.16
- Water bridges: C:K.16, C:S.18, C:S.18, C:T.35
- 12 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.3: 3 residues within 4Å:- Chain A: A.6, F.8, G.9
1 PLIP interactions:1 interactions with chain A- Water bridges: A:M.10
MRD.4: 3 residues within 4Å:- Chain A: N.33, L.34, P.36
No protein-ligand interaction detected (PLIP)MRD.5: 7 residues within 4Å:- Chain A: A.6, F.8, G.9, M.10, I.26, W.29, Y.39
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.26, A:W.29, A:Y.39
- Hydrogen bonds: A:F.8
- Water bridges: A:F.8, A:M.10
MRD.8: 3 residues within 4Å:- Chain B: A.6, F.8, G.9
1 PLIP interactions:1 interactions with chain B- Water bridges: B:M.10
MRD.9: 3 residues within 4Å:- Chain B: N.33, L.34, P.36
No protein-ligand interaction detected (PLIP)MRD.10: 7 residues within 4Å:- Chain B: A.6, F.8, G.9, M.10, I.26, W.29, Y.39
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.26, B:W.29, B:Y.39
- Hydrogen bonds: B:F.8
- Water bridges: B:F.8, B:M.10
MRD.13: 3 residues within 4Å:- Chain C: A.6, F.8, G.9
1 PLIP interactions:1 interactions with chain C- Water bridges: C:M.10
MRD.14: 3 residues within 4Å:- Chain C: N.33, L.34, P.36
No protein-ligand interaction detected (PLIP)MRD.15: 7 residues within 4Å:- Chain C: A.6, F.8, G.9, M.10, I.26, W.29, Y.39
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.26, C:W.29, C:Y.39
- Hydrogen bonds: C:F.8
- Water bridges: C:F.8, C:M.10
MRD.18: 3 residues within 4Å:- Chain D: A.6, F.8, G.9
1 PLIP interactions:1 interactions with chain D- Water bridges: D:M.10
MRD.19: 3 residues within 4Å:- Chain D: N.33, L.34, P.36
No protein-ligand interaction detected (PLIP)MRD.20: 7 residues within 4Å:- Chain D: A.6, F.8, G.9, M.10, I.26, W.29, Y.39
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.26, D:W.29, D:Y.39
- Hydrogen bonds: D:F.8
- Water bridges: D:F.8, D:M.10
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krahn, J.M. et al., Crystal structure of a type II dihydrofolate reductase catalytic ternary complex. Biochemistry (2007)
- Release Date
- 2008-06-03
- Peptides
- Dihydrofolate reductase type 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DHF: DIHYDROFOLIC ACID(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 12 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krahn, J.M. et al., Crystal structure of a type II dihydrofolate reductase catalytic ternary complex. Biochemistry (2007)
- Release Date
- 2008-06-03
- Peptides
- Dihydrofolate reductase type 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A