SMTL ID : 2rkn.1

X-ray structure of the self-defense and signaling protein DIR1 from Arabidopsis taliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: A.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:A.1 ZN.2: 3 residues within 4Å: Chain A: E.11, H.37 Ligands: ZN.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:H.37, H2O.88 ZN.3: 4 residues within 4Å: Chain A: G.6, E.11, H.37 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:E.11, A:H.37, H2O.5

2 x LP3: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

LP3.4: 13 residues within 4Å: Chain A: L.12, N.13, C.15, K.16, V.19, F.40, L.43, C.44, F.55, A.62, P.75, C.77 Ligands: LP3.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.16, A:K.16, A:V.19, A:F.40, A:L.43, A:P.75 Hydrogen bonds: A:N.13 LP3.5: 14 residues within 4Å: Chain A: I.2, Q.9, L.43, Y.46, K.47, W.51, L.52, F.55, P.59, E.60, A.62, S.63, C.77 Ligands: LP3.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.46, A:K.47, A:W.51, A:W.51, A:W.51, A:L.52, A:F.55, A:E.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lascombe, M.B. et al., The structure of "defective in induced resistance" protein of Arabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein. Protein Sci. (2008)

Release Date

2008-09-02

Peptides

DIR1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIR1 protein