SMTL ID : 2rl2.1

Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP-N-acetylglucosamine and fosfomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.22, R.93, R.122, R.399 Ligands: GG6.4, UD1.5 10 PLIP interactions: 10 interactions with chain A Water bridges: A:K.22, A:K.22, A:N.23, A:D.49, A:R.399, A:R.399 Salt bridges: A:K.22, A:R.93, A:R.122, A:R.399 SO4.2: 4 residues within 4Å: Chain A: Q.110, E.142, Y.144, K.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.110, A:Q.110, A:E.142 Salt bridges: A:K.146 SO4.3: 1 residues within 4Å: Chain A: R.157 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.157 SO4.6: 6 residues within 4Å: Chain B: K.22, R.93, R.122, R.399 Ligands: GG6.9, UD1.10 10 PLIP interactions: 10 interactions with chain B Water bridges: B:K.22, B:K.22, B:N.23, B:D.49, B:R.399, B:R.399 Salt bridges: B:K.22, B:R.93, B:R.122, B:R.399 SO4.7: 4 residues within 4Å: Chain B: Q.110, E.142, Y.144, K.146 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.110, B:Q.110, B:E.142 Salt bridges: B:K.146 SO4.8: 1 residues within 4Å: Chain B: R.157 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.157

2 x GG6: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID(Covalent)

GG6.4: 6 residues within 4Å: Chain A: R.93, C.117, S.118, I.119, R.122 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.118, A:S.118, A:I.119, A:R.399 Water bridges: A:L.372, A:L.372 GG6.9: 6 residues within 4Å: Chain B: R.93, C.117, S.118, I.119, R.122 Ligands: SO4.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.118, B:S.118, B:I.119, B:R.399 Water bridges: B:L.372, B:L.372

2 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.5: 22 residues within 4Å: Chain A: N.23, R.93, A.94, W.97, A.121, R.122, P.123, V.124, D.125, L.126, H.127, K.162, V.163, S.164, V.165, G.166, T.306, D.307, I.329, F.330, R.333 Ligands: SO4.1 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:A.94, A:W.97, A:L.126 Hydrogen bonds: A:N.23, A:D.125, A:L.126, A:H.127, A:K.162, A:V.163, A:V.165, A:G.166, A:D.307, A:R.333, A:R.373 Water bridges: A:K.22, A:K.22, A:R.93, A:R.93, A:R.93, A:A.121, A:R.122, A:K.162, A:A.167, A:E.190, A:E.190, A:R.234, A:T.306, A:T.306, A:R.333, A:R.333 Salt bridges: A:R.93, A:R.122 UD1.10: 22 residues within 4Å: Chain B: N.23, R.93, A.94, W.97, A.121, R.122, P.123, V.124, D.125, L.126, H.127, K.162, V.163, S.164, V.165, G.166, T.306, D.307, I.329, F.330, R.333 Ligands: SO4.6 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:A.94, B:W.97, B:L.126 Hydrogen bonds: B:N.23, B:D.125, B:L.126, B:H.127, B:K.162, B:V.163, B:V.165, B:G.166, B:D.307, B:R.333, B:R.373 Water bridges: B:K.22, B:K.22, B:R.93, B:R.93, B:R.93, B:A.121, B:R.122, B:K.162, B:A.167, B:E.190, B:E.190, B:R.234, B:T.306, B:T.306, B:R.333, B:R.333 Salt bridges: B:R.93, B:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP-N-acetylglucosamine and fosfomycin. Proteins (2008)

Release Date

2008-03-25

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

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