SMTL ID : 2rld.1

CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM S23 RIBOSOMAL PROTEIN FAMILY (BT_0352) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-pentamer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.5, D.8, N.9 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.5, A:D.8, H2O.2, H2O.2, H2O.3 CA.13: 3 residues within 4Å: Chain C: D.5, D.8, N.9 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.5, C:D.8, H2O.11, H2O.11 CA.16: 1 residues within 4Å: Chain D: D.103 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:D.103, H2O.12, H2O.12, H2O.12, H2O.13

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: E.35, F.36, V.37 Ligands: EDO.12 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain C: K.27 Chain D: E.35, F.36, V.37 Ligand excluded by PLIP

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.21, E.95, Q.96, S.99 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: G.1, M.2, E.4, K.7 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: K.27 Chain C: Q.33, T.89, E.90, Y.91 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: K.27, N.31 Chain C: Y.91 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: S.48, A.51, N.52, E.55 Chain C: Q.41, E.78 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain B: K.34, F.36 Chain E: N.31 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain B: K.40 Chain E: Y.26, L.43 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: M.38, T.89, Y.91 Chain B: V.23, N.24, K.27 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain B: R.21, N.24 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: F.36, V.37 Chain B: K.27, N.31 Ligands: CL.2 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain C: R.44, T.47, S.48, A.51 Chain D: E.78, W.82 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain C: N.24, F.28, Q.96 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain D: K.27 Chain E: Q.33, T.89, E.90, Y.91 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain E: R.94, E.95, E.98 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain E: Y.97, E.98, N.101, N.102 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain D: Y.26, V.30, N.31 Chain E: Q.33, K.34, Y.91 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution. To be published

Release Date

2007-10-30

Peptides

Uncharacterized protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Uncharacterized protein