SMTL ID : 2rto.1 (1 other biounit)

STREPTAVIDIN-2-IMINOBIOTIN COMPLEX, PH 2.6, SPACE GROUP I222

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

4 x IMI: 2-IMINOBIOTIN(Non-covalent)

IMI.1: 19 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, A.46, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, D.128 Chain D: W.120 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.47, A:A.50, A:W.79, A:W.79 Hydrogen bonds: A:N.23, A:S.27, A:S.27, A:S.45, A:N.49, A:S.88, A:S.88 Salt bridges: A:D.128 IMI.2: 20 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, A.46, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, D.128, F.130 Chain C: W.120 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.50, B:W.79, B:W.79, B:W.79, B:L.110 Hydrogen bonds: B:N.23, B:S.27, B:Y.43, B:S.45, B:S.45, B:N.49, B:S.88 Salt bridges: B:D.128 IMI.3: 19 residues within 4Å: Chain B: W.120 Chain C: N.23, L.25, S.27, Y.43, S.45, A.46, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, D.128 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:V.47, C:A.50, C:W.79, C:W.79 Hydrogen bonds: C:N.23, C:S.27, C:S.27, C:S.45, C:N.49, C:S.88, C:S.88 Salt bridges: C:D.128 IMI.4: 20 residues within 4Å: Chain A: W.120 Chain D: N.23, L.25, S.27, Y.43, S.45, A.46, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, D.128, F.130 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:A.50, D:W.79, D:W.79, D:W.79, D:L.110 Hydrogen bonds: D:N.23, D:S.27, D:Y.43, D:S.45, D:S.45, D:N.49, D:S.88 Salt bridges: D:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katz, B.A., Binding of biotin to streptavidin stabilizes intersubunit salt bridges between Asp61 and His87 at low pH. J.Mol.Biol. (1997)

Release Date

1998-10-14

Peptides

STREPTAVIDIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
B

D
D

STREPTAVIDIN

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