SMTL ID : 2sem.1

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ACE- PRO- PRO- PRO- VAL- IPG- PRO- ARG: PROTEIN (SH3 PEPTOID INHIBITOR)(Non-covalent)

ACE-PRO-PRO-PRO-VAL-IPG-PRO-ARG.1: 10 residues within 4Å: Chain A: F.9, F.11, Q.14, E.15, E.18, N.36, W.37, P.50, N.52, Y.53 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.9, A:N.36, A:P.50, A:Y.53 Hydrogen bonds: A:Q.14, A:N.52 Salt bridges: A:E.18 ACE-PRO-PRO-PRO-VAL-IPG-PRO-ARG.2: 10 residues within 4Å: Chain B: F.9, E.15, S.16, E.18, N.36, W.37, I.48, P.50, N.52, Y.53 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:N.36, B:Y.53 Hydrogen bonds: B:S.16, B:S.16, B:N.52, B:Y.53 Water bridges: B:N.36 Salt bridges: B:E.18 pi-Cation interactions: B:W.37, B:W.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, J.T. et al., Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors. Science (1998)

Release Date

1999-01-06

Peptides

PROTEIN (SEX MUSCLE ABNORMAL PROTEIN 5): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (SEX MUSCLE ABNORMAL PROTEIN 5)

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