SMTL ID : 2spt.1

DIFFERENCES IN THE METAL ION STRUCTURE BETWEEN SR-AND CA-PROTHROMBIN FRAGMENT 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: R.91, N.101, T.103, T.104 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.103 Water bridges: A:P.98

8 x SR: STRONTIUM ION(Non-functional Binders)

SR.2: 2 residues within 4Å: Chain A: E.26, E.30 No protein-ligand interaction detected (PLIP) SR.3: 3 residues within 4Å: Chain A: E.8, E.27, E.30 No protein-ligand interaction detected (PLIP) SR.4: 4 residues within 4Å: Chain A: E.8, E.17, E.27, E.30 No protein-ligand interaction detected (PLIP) SR.5: 6 residues within 4Å: Chain A: A.1, N.2, E.7, E.8, E.17, E.27 No protein-ligand interaction detected (PLIP) SR.6: 5 residues within 4Å: Chain A: A.1, N.2, E.7, E.17, E.21 No protein-ligand interaction detected (PLIP) SR.7: 2 residues within 4Å: Chain A: E.20, E.21 No protein-ligand interaction detected (PLIP) SR.8: 2 residues within 4Å: Chain A: E.15, E.20 No protein-ligand interaction detected (PLIP) SR.9: 1 residues within 4Å: Chain A: E.30 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seshadri, T.P. et al., Differences in the metal ion structure between Sr- and Ca-prothrombin fragment 1. Biochemistry (1994)

Release Date

1994-05-31

Peptides

PROTHROMBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTHROMBIN