SMTL ID : 2tbv.3 (4 other biounits)

STRUCTURE OF TOMATO BUSHY STUNT VIRUS. V. COAT PROTEIN SEQUENCE DETERMINATION AND ITS STRUCTURAL IMPLICATIONS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-18-mer

Ligands

36 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.183, D.186 Chain B: D.153, D.225, Q.267 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:D.225, A:D.186, A:D.186 CA.2: 4 residues within 4Å: Chain A: D.153, Q.267 Chain C: D.181, D.186 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.181 CA.3: 5 residues within 4Å: Chain A: D.181, D.186 Chain B: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.181 CA.4: 5 residues within 4Å: Chain B: D.181, D.183, D.186 Chain C: D.153, Q.267 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.181, B:D.181 CA.5: 5 residues within 4Å: Chain A: D.153, D.225, S.226 Chain C: D.183, D.186 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Metal complexes: A:D.153, A:D.225, C:D.183, C:D.186, C:D.186 CA.6: 4 residues within 4Å: Chain B: D.183, D.186 Chain C: D.153, D.225 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.153, C:D.153 CA.7: 5 residues within 4Å: Chain D: D.183, D.186 Chain E: D.153, D.225, Q.267 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Metal complexes: D:D.186, D:D.186, E:D.225 CA.8: 4 residues within 4Å: Chain D: D.153, Q.267 Chain F: D.181, D.186 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.181 CA.9: 5 residues within 4Å: Chain D: D.181, D.186 Chain E: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.181 CA.10: 5 residues within 4Å: Chain E: D.181, D.183, D.186 Chain F: D.153, Q.267 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.181, E:D.181 CA.11: 5 residues within 4Å: Chain D: D.153, D.225, S.226 Chain F: D.183, D.186 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain F Metal complexes: D:D.153, D:D.225, F:D.183, F:D.186, F:D.186 CA.12: 4 residues within 4Å: Chain E: D.183, D.186 Chain F: D.153, D.225 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.153, F:D.153 CA.13: 5 residues within 4Å: Chain G: D.183, D.186 Chain H: D.153, D.225, Q.267 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain G Metal complexes: H:D.225, G:D.186, G:D.186 CA.14: 4 residues within 4Å: Chain G: D.153, Q.267 Chain I: D.181, D.186 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:D.181 CA.15: 5 residues within 4Å: Chain G: D.181, D.186 Chain H: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.181 CA.16: 5 residues within 4Å: Chain H: D.181, D.183, D.186 Chain I: D.153, Q.267 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.181, H:D.181 CA.17: 5 residues within 4Å: Chain G: D.153, D.225, S.226 Chain I: D.183, D.186 5 PLIP interactions: 3 interactions with chain I, 2 interactions with chain G Metal complexes: I:D.183, I:D.186, I:D.186, G:D.153, G:D.225 CA.18: 4 residues within 4Å: Chain H: D.183, D.186 Chain I: D.153, D.225 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:D.153, I:D.153 CA.19: 5 residues within 4Å: Chain J: D.183, D.186 Chain K: D.153, D.225, Q.267 3 PLIP interactions: 1 interactions with chain K, 2 interactions with chain J Metal complexes: K:D.225, J:D.186, J:D.186 CA.20: 4 residues within 4Å: Chain J: D.153, Q.267 Chain L: D.181, D.186 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:D.181 CA.21: 5 residues within 4Å: Chain J: D.181, D.186 Chain K: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.181 CA.22: 5 residues within 4Å: Chain K: D.181, D.183, D.186 Chain L: D.153, Q.267 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.181, K:D.181 CA.23: 5 residues within 4Å: Chain J: D.153, D.225, S.226 Chain L: D.183, D.186 5 PLIP interactions: 2 interactions with chain J, 3 interactions with chain L Metal complexes: J:D.153, J:D.225, L:D.183, L:D.186, L:D.186 CA.24: 4 residues within 4Å: Chain K: D.183, D.186 Chain L: D.153, D.225 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:D.153, L:D.153 CA.25: 5 residues within 4Å: Chain M: D.183, D.186 Chain N: D.153, D.225, Q.267 3 PLIP interactions: 1 interactions with chain N, 2 interactions with chain M Metal complexes: N:D.225, M:D.186, M:D.186 CA.26: 4 residues within 4Å: Chain M: D.153, Q.267 Chain O: D.181, D.186 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:D.181 CA.27: 5 residues within 4Å: Chain M: D.181, D.186 Chain N: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:D.181 CA.28: 5 residues within 4Å: Chain N: D.181, D.183, D.186 Chain O: D.153, Q.267 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:D.181, N:D.181 CA.29: 5 residues within 4Å: Chain M: D.153, D.225, S.226 Chain O: D.183, D.186 5 PLIP interactions: 3 interactions with chain O, 2 interactions with chain M Metal complexes: O:D.183, O:D.186, O:D.186, M:D.153, M:D.225 CA.30: 4 residues within 4Å: Chain N: D.183, D.186 Chain O: D.153, D.225 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:D.153, O:D.153 CA.31: 5 residues within 4Å: Chain P: D.183, D.186 Chain Q: D.153, D.225, Q.267 3 PLIP interactions: 2 interactions with chain P, 1 interactions with chain Q Metal complexes: P:D.186, P:D.186, Q:D.225 CA.32: 4 residues within 4Å: Chain P: D.153, Q.267 Chain R: D.181, D.186 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:D.181 CA.33: 5 residues within 4Å: Chain P: D.181, D.186 Chain Q: D.153, Q.267, P.268 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:D.181 CA.34: 5 residues within 4Å: Chain Q: D.181, D.183, D.186 Chain R: D.153, Q.267 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:D.181, Q:D.181 CA.35: 5 residues within 4Å: Chain P: D.153, D.225, S.226 Chain R: D.183, D.186 5 PLIP interactions: 2 interactions with chain P, 3 interactions with chain R Metal complexes: P:D.153, P:D.225, R:D.183, R:D.186, R:D.186 CA.36: 4 residues within 4Å: Chain Q: D.183, D.186 Chain R: D.153, D.225 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:D.153, R:D.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopper, P. et al., Structure of tomato bushy stunt virus. V. Coat protein sequence determination and its structural implications. J.Mol.Biol. (1984)

Release Date

1984-07-20

Peptides

TOMATO BUSHY STUNT VIRUS: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

TOMATO BUSHY STUNT VIRUS

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