SMTL ID : 2tmv.1 (2 other biounits)

VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION

Coordinates

PDB Format Compare

Method

FIBER DIFFRACTION 2.90 Å

Oligo State

homo-49-mer

Ligands

49 x G- A- A: RNA (5'-R(P*GP*AP*A)-3')(Non-covalent)

G-A-A.1: 10 residues within 4Å: Chain A: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: CA.2, G-A-A.3 Protein-ligand interaction information (PLIP) not available G-A-A.3: 14 residues within 4Å: Chain A: G.85, T.89, R.113 Chain B: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.1, CA.4, G-A-A.5 Protein-ligand interaction information (PLIP) not available G-A-A.5: 14 residues within 4Å: Chain B: G.85, T.89, R.113 Chain C: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.3, CA.6, G-A-A.7 Protein-ligand interaction information (PLIP) not available G-A-A.7: 14 residues within 4Å: Chain C: G.85, T.89, R.113 Chain D: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.5, CA.8, G-A-A.9 Protein-ligand interaction information (PLIP) not available G-A-A.9: 14 residues within 4Å: Chain D: G.85, T.89, R.113 Chain E: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.7, CA.10, G-A-A.11 Protein-ligand interaction information (PLIP) not available G-A-A.11: 14 residues within 4Å: Chain E: G.85, T.89, R.113 Chain F: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.9, CA.12, G-A-A.13 Protein-ligand interaction information (PLIP) not available G-A-A.13: 14 residues within 4Å: Chain F: G.85, T.89, R.113 Chain G: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.11, CA.14, G-A-A.15 Protein-ligand interaction information (PLIP) not available G-A-A.15: 14 residues within 4Å: Chain G: G.85, T.89, R.113 Chain H: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.13, CA.16, G-A-A.17 Protein-ligand interaction information (PLIP) not available G-A-A.17: 14 residues within 4Å: Chain H: G.85, T.89, R.113 Chain I: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.15, CA.18, G-A-A.19 Protein-ligand interaction information (PLIP) not available G-A-A.19: 14 residues within 4Å: Chain I: G.85, T.89, R.113 Chain J: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.17, CA.20, G-A-A.21 Protein-ligand interaction information (PLIP) not available G-A-A.21: 14 residues within 4Å: Chain J: G.85, T.89, R.113 Chain K: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.19, CA.22, G-A-A.23 Protein-ligand interaction information (PLIP) not available G-A-A.23: 14 residues within 4Å: Chain K: G.85, T.89, R.113 Chain L: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.21, CA.24, G-A-A.25 Protein-ligand interaction information (PLIP) not available G-A-A.25: 14 residues within 4Å: Chain L: G.85, T.89, R.113 Chain M: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.23, CA.26, G-A-A.27 Protein-ligand interaction information (PLIP) not available G-A-A.27: 14 residues within 4Å: Chain M: G.85, T.89, R.113 Chain N: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.25, CA.28, G-A-A.29 Protein-ligand interaction information (PLIP) not available G-A-A.29: 14 residues within 4Å: Chain N: G.85, T.89, R.113 Chain O: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.27, CA.30, G-A-A.31 Protein-ligand interaction information (PLIP) not available G-A-A.31: 14 residues within 4Å: Chain O: G.85, T.89, R.113 Chain P: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.29, CA.32, G-A-A.33 Protein-ligand interaction information (PLIP) not available G-A-A.33: 22 residues within 4Å: Chain A: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain P: G.85, T.89, R.113 Chain Q: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.31, CA.34, G-A-A.35 Protein-ligand interaction information (PLIP) not available G-A-A.35: 26 residues within 4Å: Chain A: Q.38, R.46, R.90, R.92 Chain B: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain Q: G.85, T.89, R.113 Chain R: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.33, CA.36, G-A-A.37 Protein-ligand interaction information (PLIP) not available G-A-A.37: 26 residues within 4Å: Chain B: Q.38, R.46, R.90, R.92 Chain C: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain R: G.85, T.89, R.113 Chain S: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.35, CA.38, G-A-A.39 Protein-ligand interaction information (PLIP) not available G-A-A.39: 26 residues within 4Å: Chain C: Q.38, R.46, R.90, R.92 Chain D: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain S: G.85, T.89, R.113 Chain T: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.37, CA.40, G-A-A.41 Protein-ligand interaction information (PLIP) not available G-A-A.41: 26 residues within 4Å: Chain D: Q.38, R.46, R.90, R.92 Chain E: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain T: G.85, T.89, R.113 Chain U: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.39, CA.42, G-A-A.43 Protein-ligand interaction information (PLIP) not available G-A-A.43: 26 residues within 4Å: Chain E: Q.38, R.46, R.90, R.92 Chain F: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain U: G.85, T.89, R.113 Chain V: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.41, CA.44, G-A-A.45 Protein-ligand interaction information (PLIP) not available G-A-A.45: 26 residues within 4Å: Chain F: Q.38, R.46, R.90, R.92 Chain G: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain V: G.85, T.89, R.113 Chain W: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.43, CA.46, G-A-A.47 Protein-ligand interaction information (PLIP) not available G-A-A.47: 26 residues within 4Å: Chain G: Q.38, R.46, R.90, R.92 Chain H: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain W: G.85, T.89, R.113 Chain X: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.45, CA.48, G-A-A.49 Protein-ligand interaction information (PLIP) not available G-A-A.49: 26 residues within 4Å: Chain H: Q.38, R.46, R.90, R.92 Chain I: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain X: G.85, T.89, R.113 Chain Y: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.47, CA.50, G-A-A.51 Protein-ligand interaction information (PLIP) not available G-A-A.51: 26 residues within 4Å: Chain I: Q.38, R.46, R.90, R.92 Chain J: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain Y: G.85, T.89, R.113 Chain Z: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Ligands: G-A-A.49, CA.52, G-A-A.53 Protein-ligand interaction information (PLIP) not available G-A-A.53: 26 residues within 4Å: Chain 0: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain J: Q.38, R.46, R.90, R.92 Chain K: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain Z: G.85, T.89, R.113 Ligands: G-A-A.51, CA.54, G-A-A.55 Protein-ligand interaction information (PLIP) not available G-A-A.55: 26 residues within 4Å: Chain 0: G.85, T.89, R.113 Chain 1: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain K: Q.38, R.46, R.90, R.92 Chain L: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.53, CA.56, G-A-A.57 Protein-ligand interaction information (PLIP) not available G-A-A.57: 26 residues within 4Å: Chain 1: G.85, T.89, R.113 Chain 2: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain L: Q.38, R.46, R.90, R.92 Chain M: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.55, CA.58, G-A-A.59 Protein-ligand interaction information (PLIP) not available G-A-A.59: 26 residues within 4Å: Chain 2: G.85, T.89, R.113 Chain 3: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain M: Q.38, R.46, R.90, R.92 Chain N: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.57, CA.60, G-A-A.61 Protein-ligand interaction information (PLIP) not available G-A-A.61: 26 residues within 4Å: Chain 3: G.85, T.89, R.113 Chain 4: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain N: Q.38, R.46, R.90, R.92 Chain O: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.59, CA.62, G-A-A.63 Protein-ligand interaction information (PLIP) not available G-A-A.63: 26 residues within 4Å: Chain 4: G.85, T.89, R.113 Chain 5: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain O: Q.38, R.46, R.90, R.92 Chain P: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.61, CA.64, G-A-A.65 Protein-ligand interaction information (PLIP) not available G-A-A.65: 26 residues within 4Å: Chain 5: G.85, T.89, R.113 Chain 6: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain P: Q.38, R.46, R.90, R.92 Chain Q: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.63, CA.66, G-A-A.67 Protein-ligand interaction information (PLIP) not available G-A-A.67: 26 residues within 4Å: Chain 6: G.85, T.89, R.113 Chain 7: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain Q: Q.38, R.46, R.90, R.92 Chain R: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.65, CA.68, G-A-A.69 Protein-ligand interaction information (PLIP) not available G-A-A.69: 26 residues within 4Å: Chain 7: G.85, T.89, R.113 Chain 8: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain R: Q.38, R.46, R.90, R.92 Chain S: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.67, CA.70, G-A-A.71 Protein-ligand interaction information (PLIP) not available G-A-A.71: 26 residues within 4Å: Chain 8: G.85, T.89, R.113 Chain 9: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Chain S: Q.38, R.46, R.90, R.92 Chain T: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.69, CA.72, G-A-A.73 Protein-ligand interaction information (PLIP) not available G-A-A.73: 26 residues within 4Å: Chain 9: G.85, T.89, R.113 Chain T: Q.38, R.46, R.90, R.92 Chain U: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.71, CA.74, G-A-A.75 Chain a: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.75: 26 residues within 4Å: Chain U: Q.38, R.46, R.90, R.92 Chain V: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.73, CA.76, G-A-A.77 Chain a: G.85, T.89, R.113 Chain b: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.77: 26 residues within 4Å: Chain V: Q.38, R.46, R.90, R.92 Chain W: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.75, CA.78, G-A-A.79 Chain b: G.85, T.89, R.113 Chain c: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.79: 26 residues within 4Å: Chain W: Q.38, R.46, R.90, R.92 Chain X: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.77, CA.80, G-A-A.81 Chain c: G.85, T.89, R.113 Chain d: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.81: 26 residues within 4Å: Chain X: Q.38, R.46, R.90, R.92 Chain Y: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.79, CA.82, G-A-A.83 Chain d: G.85, T.89, R.113 Chain e: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.83: 26 residues within 4Å: Chain Y: Q.38, R.46, R.90, R.92 Chain Z: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.81, CA.84, G-A-A.85 Chain e: G.85, T.89, R.113 Chain f: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.85: 26 residues within 4Å: Chain 0: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Chain Z: Q.38, R.46, R.90, R.92 Ligands: G-A-A.83, CA.86, G-A-A.87 Chain f: G.85, T.89, R.113 Chain g: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.87: 26 residues within 4Å: Chain 0: Q.38, R.46, R.90, R.92 Chain 1: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.85, CA.88, G-A-A.89 Chain g: G.85, T.89, R.113 Chain h: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.89: 26 residues within 4Å: Chain 1: Q.38, R.46, R.90, R.92 Chain 2: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.87, CA.90, G-A-A.91 Chain h: G.85, T.89, R.113 Chain i: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.91: 26 residues within 4Å: Chain 2: Q.38, R.46, R.90, R.92 Chain 3: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.89, CA.92, G-A-A.93 Chain i: G.85, T.89, R.113 Chain j: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.93: 26 residues within 4Å: Chain 3: Q.38, R.46, R.90, R.92 Chain 4: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.91, CA.94, G-A-A.95 Chain j: G.85, T.89, R.113 Chain k: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.95: 26 residues within 4Å: Chain 4: Q.38, R.46, R.90, R.92 Chain 5: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.93, CA.96, G-A-A.97 Chain k: G.85, T.89, R.113 Chain l: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available G-A-A.97: 25 residues within 4Å: Chain 5: Q.38, R.46, R.90, R.92 Chain 6: N.33, Q.34, Q.36, T.37, Q.38, Q.39, A.40, I.94 Ligands: G-A-A.95, CA.98 Chain l: G.85, T.89, R.113 Chain m: T.89, R.113, D.115, D.116, V.119, A.120, S.123, N.127 Protein-ligand interaction information (PLIP) not available

49 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.116 Ligands: G-A-A.1, G-A-A.1, G-A-A.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.116, H2O.1, H2O.1 CA.4: 4 residues within 4Å: Chain B: D.116 Ligands: G-A-A.3, G-A-A.3, G-A-A.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.116, H2O.3, H2O.4 CA.6: 4 residues within 4Å: Chain C: D.116 Ligands: G-A-A.5, G-A-A.5, G-A-A.5 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.116, H2O.6, H2O.6 CA.8: 4 residues within 4Å: Chain D: D.116 Ligands: G-A-A.7, G-A-A.7, G-A-A.7 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.116, H2O.9, H2O.9 CA.10: 4 residues within 4Å: Chain E: D.116 Ligands: G-A-A.9, G-A-A.9, G-A-A.9 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.116, H2O.12, H2O.12 CA.12: 4 residues within 4Å: Chain F: D.116 Ligands: G-A-A.11, G-A-A.11, G-A-A.11 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.116, H2O.15, H2O.15 CA.14: 4 residues within 4Å: Chain G: D.116 Ligands: G-A-A.13, G-A-A.13, G-A-A.13 3 PLIP interactions: 1 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.116, H2O.18, H2O.18 CA.16: 4 residues within 4Å: Chain H: D.116 Ligands: G-A-A.15, G-A-A.15, G-A-A.15 3 PLIP interactions: 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.116, H2O.21, H2O.21 CA.18: 4 residues within 4Å: Chain I: D.116 Ligands: G-A-A.17, G-A-A.17, G-A-A.17 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:D.116, H2O.23, H2O.23 CA.20: 4 residues within 4Å: Chain J: D.116 Ligands: G-A-A.19, G-A-A.19, G-A-A.19 3 PLIP interactions: 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:D.116, H2O.26, H2O.26 CA.22: 4 residues within 4Å: Chain K: D.116 Ligands: G-A-A.21, G-A-A.21, G-A-A.21 3 PLIP interactions: 1 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:D.116, H2O.29, H2O.29 CA.24: 4 residues within 4Å: Chain L: D.116 Ligands: G-A-A.23, G-A-A.23, G-A-A.23 3 PLIP interactions: 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:D.116, H2O.32, H2O.32 CA.26: 4 residues within 4Å: Chain M: D.116 Ligands: G-A-A.25, G-A-A.25, G-A-A.25 3 PLIP interactions: 1 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:D.116, H2O.35, H2O.35 CA.28: 4 residues within 4Å: Chain N: D.116 Ligands: G-A-A.27, G-A-A.27, G-A-A.27 3 PLIP interactions: 1 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:D.116, H2O.38, H2O.38 CA.30: 4 residues within 4Å: Chain O: D.116 Ligands: G-A-A.29, G-A-A.29, G-A-A.29 3 PLIP interactions: 1 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:D.116, H2O.40, H2O.41 CA.32: 4 residues within 4Å: Chain P: D.116 Ligands: G-A-A.31, G-A-A.31, G-A-A.31 3 PLIP interactions: 1 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:D.116, H2O.43, H2O.43 CA.34: 4 residues within 4Å: Chain Q: D.116 Ligands: G-A-A.33, G-A-A.33, G-A-A.33 3 PLIP interactions: 1 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:D.116, H2O.46, H2O.46 CA.36: 4 residues within 4Å: Chain R: D.116 Ligands: G-A-A.35, G-A-A.35, G-A-A.35 3 PLIP interactions: 1 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:D.116, H2O.49, H2O.49 CA.38: 4 residues within 4Å: Chain S: D.116 Ligands: G-A-A.37, G-A-A.37, G-A-A.37 3 PLIP interactions: 1 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:D.116, H2O.52, H2O.52 CA.40: 4 residues within 4Å: Chain T: D.116 Ligands: G-A-A.39, G-A-A.39, G-A-A.39 3 PLIP interactions: 1 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:D.116, H2O.55, H2O.55 CA.42: 4 residues within 4Å: Chain U: D.116 Ligands: G-A-A.41, G-A-A.41, G-A-A.41 3 PLIP interactions: 1 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:D.116, H2O.58, H2O.58 CA.44: 4 residues within 4Å: Chain V: D.116 Ligands: G-A-A.43, G-A-A.43, G-A-A.43 3 PLIP interactions: 1 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:D.116, H2O.60, H2O.60 CA.46: 4 residues within 4Å: Chain W: D.116 Ligands: G-A-A.45, G-A-A.45, G-A-A.45 3 PLIP interactions: 1 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:D.116, H2O.63, H2O.63 CA.48: 4 residues within 4Å: Chain X: D.116 Ligands: G-A-A.47, G-A-A.47, G-A-A.47 3 PLIP interactions: 1 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:D.116, H2O.66, H2O.66 CA.50: 4 residues within 4Å: Chain Y: D.116 Ligands: G-A-A.49, G-A-A.49, G-A-A.49 3 PLIP interactions: 1 interactions with chain Y, 2 Ligand-Water interactions Metal complexes: Y:D.116, H2O.69, H2O.69 CA.52: 4 residues within 4Å: Chain Z: D.116 Ligands: G-A-A.51, G-A-A.51, G-A-A.51 3 PLIP interactions: 1 interactions with chain Z, 2 Ligand-Water interactions Metal complexes: Z:D.116, H2O.72, H2O.72 CA.54: 4 residues within 4Å: Chain 0: D.116 Ligands: G-A-A.53, G-A-A.53, G-A-A.53 3 PLIP interactions: 1 interactions with chain 0, 2 Ligand-Water interactions Metal complexes: 0:D.116, H2O.75, H2O.75 CA.56: 4 residues within 4Å: Chain 1: D.116 Ligands: G-A-A.55, G-A-A.55, G-A-A.55 3 PLIP interactions: 1 interactions with chain 1, 2 Ligand-Water interactions Metal complexes: 1:D.116, H2O.77, H2O.78 CA.58: 4 residues within 4Å: Chain 2: D.116 Ligands: G-A-A.57, G-A-A.57, G-A-A.57 3 PLIP interactions: 1 interactions with chain 2, 2 Ligand-Water interactions Metal complexes: 2:D.116, H2O.80, H2O.80 CA.60: 4 residues within 4Å: Chain 3: D.116 Ligands: G-A-A.59, G-A-A.59, G-A-A.59 3 PLIP interactions: 1 interactions with chain 3, 2 Ligand-Water interactions Metal complexes: 3:D.116, H2O.83, H2O.83 CA.62: 4 residues within 4Å: Chain 4: D.116 Ligands: G-A-A.61, G-A-A.61, G-A-A.61 3 PLIP interactions: 1 interactions with chain 4, 2 Ligand-Water interactions Metal complexes: 4:D.116, H2O.86, H2O.86 CA.64: 4 residues within 4Å: Chain 5: D.116 Ligands: G-A-A.63, G-A-A.63, G-A-A.63 3 PLIP interactions: 1 interactions with chain 5, 2 Ligand-Water interactions Metal complexes: 5:D.116, H2O.89, H2O.89 CA.66: 4 residues within 4Å: Chain 6: D.116 Ligands: G-A-A.65, G-A-A.65, G-A-A.65 3 PLIP interactions: 1 interactions with chain 6, 2 Ligand-Water interactions Metal complexes: 6:D.116, H2O.92, H2O.92 CA.68: 4 residues within 4Å: Chain 7: D.116 Ligands: G-A-A.67, G-A-A.67, G-A-A.67 3 PLIP interactions: 1 interactions with chain 7, 2 Ligand-Water interactions Metal complexes: 7:D.116, H2O.95, H2O.95 CA.70: 4 residues within 4Å: Chain 8: D.116 Ligands: G-A-A.69, G-A-A.69, G-A-A.69 3 PLIP interactions: 1 interactions with chain 8, 2 Ligand-Water interactions Metal complexes: 8:D.116, H2O.97, H2O.97 CA.72: 4 residues within 4Å: Chain 9: D.116 Ligands: G-A-A.71, G-A-A.71, G-A-A.71 3 PLIP interactions: 1 interactions with chain 9, 2 Ligand-Water interactions Metal complexes: 9:D.116, H2O.100, H2O.100 CA.74: 4 residues within 4Å: Ligands: G-A-A.73, G-A-A.73, G-A-A.73 Chain a: D.116 3 PLIP interactions: 1 interactions with chain a, 2 Ligand-Water interactions Metal complexes: a:D.116, H2O.103, H2O.103 CA.76: 4 residues within 4Å: Ligands: G-A-A.75, G-A-A.75, G-A-A.75 Chain b: D.116 3 PLIP interactions: 1 interactions with chain b, 2 Ligand-Water interactions Metal complexes: b:D.116, H2O.106, H2O.106 CA.78: 4 residues within 4Å: Ligands: G-A-A.77, G-A-A.77, G-A-A.77 Chain c: D.116 3 PLIP interactions: 1 interactions with chain c, 2 Ligand-Water interactions Metal complexes: c:D.116, H2O.109, H2O.109 CA.80: 4 residues within 4Å: Ligands: G-A-A.79, G-A-A.79, G-A-A.79 Chain d: D.116 3 PLIP interactions: 1 interactions with chain d, 2 Ligand-Water interactions Metal complexes: d:D.116, H2O.112, H2O.112 CA.82: 4 residues within 4Å: Ligands: G-A-A.81, G-A-A.81, G-A-A.81 Chain e: D.116 3 PLIP interactions: 1 interactions with chain e, 2 Ligand-Water interactions Metal complexes: e:D.116, H2O.114, H2O.115 CA.84: 4 residues within 4Å: Ligands: G-A-A.83, G-A-A.83, G-A-A.83 Chain f: D.116 3 PLIP interactions: 1 interactions with chain f, 2 Ligand-Water interactions Metal complexes: f:D.116, H2O.117, H2O.117 CA.86: 4 residues within 4Å: Ligands: G-A-A.85, G-A-A.85, G-A-A.85 Chain g: D.116 3 PLIP interactions: 1 interactions with chain g, 2 Ligand-Water interactions Metal complexes: g:D.116, H2O.120, H2O.120 CA.88: 4 residues within 4Å: Ligands: G-A-A.87, G-A-A.87, G-A-A.87 Chain h: D.116 3 PLIP interactions: 1 interactions with chain h, 2 Ligand-Water interactions Metal complexes: h:D.116, H2O.123, H2O.123 CA.90: 4 residues within 4Å: Ligands: G-A-A.89, G-A-A.89, G-A-A.89 Chain i: D.116 3 PLIP interactions: 1 interactions with chain i, 2 Ligand-Water interactions Metal complexes: i:D.116, H2O.126, H2O.126 CA.92: 4 residues within 4Å: Ligands: G-A-A.91, G-A-A.91, G-A-A.91 Chain j: D.116 3 PLIP interactions: 1 interactions with chain j, 2 Ligand-Water interactions Metal complexes: j:D.116, H2O.129, H2O.129 CA.94: 4 residues within 4Å: Ligands: G-A-A.93, G-A-A.93, G-A-A.93 Chain k: D.116 3 PLIP interactions: 1 interactions with chain k, 2 Ligand-Water interactions Metal complexes: k:D.116, H2O.132, H2O.132 CA.96: 4 residues within 4Å: Ligands: G-A-A.95, G-A-A.95, G-A-A.95 Chain l: D.116 3 PLIP interactions: 1 interactions with chain l, 2 Ligand-Water interactions Metal complexes: l:D.116, H2O.134, H2O.134 CA.98: 4 residues within 4Å: Ligands: G-A-A.97, G-A-A.97, G-A-A.97 Chain m: D.116 3 PLIP interactions: 1 interactions with chain m, 2 Ligand-Water interactions Metal complexes: m:D.116, H2O.137, H2O.137

Links

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Citation

Namba, K. et al., Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction. J.Mol.Biol. (1989)

Release Date

1989-01-09

Peptides

TMV COAT PROTEIN: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklm

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
P

C
P

D
P

E
P

F
P

G
P

H
P

I
P

J
P

K
P

L
P

M
P

N
P

O
P

P
P

Q
P

R
P

S
P

T
P

U
P

V
P

W
P

X
P

Y
P

Z
P

0
P

1
P

2
P

3
P

4
P

5
P

6
P

7
P

8
P

9
P

a
P

b
P

c
P

d
P

e
P

f
P

g
P

h
P

i
P

j
P

k
P

l
P

m
P

TMV COAT PROTEIN

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