SMTL ID : 2uuq.1

Crystal structure of CYP130 from Mycobacterium tuberculosis in the ligand-free form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: L.78, M.96, V.97, H.104, R.108, M.247, G.250, G.251, T.254, V.255, M.258, L.291, P.296, V.297, L.300, R.302, Y.325, T.353, F.354, S.355, A.358, H.359, C.361, L.362, G.363, A.367 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.97, A:T.254, A:M.258, A:L.291, A:V.297, A:L.300, A:Y.325, A:T.353, A:L.362, A:A.367 Hydrogen bonds: A:Y.325, A:S.355, A:S.355 Salt bridges: A:H.104, A:R.108, A:R.302, A:H.359 pi-Stacking: A:F.354 Metal complexes: A:C.361, H2O.8 HEM.6: 26 residues within 4Å: Chain B: L.78, M.96, V.97, H.104, R.108, M.247, G.250, G.251, T.254, V.255, M.258, L.291, P.296, V.297, L.300, R.302, Y.325, T.353, F.354, S.355, A.358, H.359, C.361, L.362, G.363, A.367 19 PLIP interactions: 18 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:V.97, B:T.254, B:M.258, B:L.291, B:V.297, B:L.300, B:Y.325, B:T.353, B:L.362, B:A.367 Hydrogen bonds: B:S.355, B:S.355 Salt bridges: B:H.104, B:R.108, B:R.302, B:H.359 pi-Stacking: B:F.354 Metal complexes: B:C.361, H2O.19

8 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 4 residues within 4Å: Chain A: R.268, R.269, E.341, L.342 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.268, A:L.342 Hydrogen bonds: A:R.269 IPA.3: 2 residues within 4Å: Chain A: H.360, R.368 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.368, A:R.368 IPA.4: 5 residues within 4Å: Chain A: T.20, A.21, E.22, G.396, G.397 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.21, A:E.22 IPA.5: 9 residues within 4Å: Chain A: F.16, Q.17, L.18, A.19, W.24, M.30, Y.31, L.324, S.398 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.16, A:W.24, A:Y.31, A:L.324 Hydrogen bonds: A:A.19 IPA.7: 4 residues within 4Å: Chain B: R.268, R.269, E.341, L.342 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.268, B:L.342 Hydrogen bonds: B:R.269 IPA.8: 2 residues within 4Å: Chain B: H.360, R.368 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.368, B:R.368 IPA.9: 5 residues within 4Å: Chain B: T.20, A.21, E.22, G.396, G.397 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.21, B:E.22 IPA.10: 9 residues within 4Å: Chain B: F.16, Q.17, L.18, A.19, W.24, M.30, Y.31, L.324, S.398 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.16, B:W.24, B:Y.31, B:L.324 Hydrogen bonds: B:A.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouellet, H. et al., Mycobacterium Tuberculosis Cyp130:Crystal Mycobacterium Tuberculosis Cyp130: Crystal Structure, Biophysical Characterization, and Interactions with Antifungal Azole Drugs. J.Biol.Chem. (2008)

Release Date

2007-12-18

Peptides

CYTOCHROME P450 130: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CYTOCHROME P450 130

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