SMTL ID : 2uur.1

N-terminal NC4 domain of collagen IX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: S.113, D.190, D.192 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.190, A:D.192, H2O.8

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: L.216, H.218, R.223 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.223

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.53, V.54, V.55 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.54 EDO.4: 2 residues within 4Å: Chain A: S.47, R.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.53 EDO.5: 6 residues within 4Å: Chain A: V.55, T.59, L.60, Q.61, V.62 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: E.19, L.20, S.82, G.83, L.84, P.85 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.20 Water bridges: A:C.21, A:S.82, A:G.83, A:L.84 EDO.7: 3 residues within 4Å: Chain A: R.223, E.227, T.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.223, A:T.228, A:T.228 Water bridges: A:R.223, A:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leppanen, V.-M. et al., Crystal Structure of the N-Terminal Nc4 Domain of Collagen Ix, a Zinc Binding Member of the Laminin-Neurexin-Sex Hormone Binding Globulin (Lns) Domain Family. J.Biol.Chem. (2007)

Release Date

2007-06-05

Peptides

COLLAGEN ALPHA-1(IX) CHAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

COLLAGEN ALPHA-1(IX) CHAIN